Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09342 ATGACATTTGAAGGAAGAGATGGTGCTAGTGATTGGCCCTTAGAGCTTTTAAAAGATTGTGCTTCTGCAAGTGAACATAATGGAAAAACAATTTCTTTAACATTTCAAGAGACACAACAAGAATCATTGCCTCAAGCCAATAATATTTATGATGGAGTTCCTTATGAAGGGAAAATGTTTAATAGTGATGATGAAGCTTATGAACTTTATTGTGCATTTGCACGAAAAAATGGTTTTTCGATTAGACGTGACCATACTTACAAATCTAGTAAGAATCAATCTGAGGAGAATCCATTGGGTATTTATAAAAGAGAATTTGTTTGTCATCGTGCTGGTTCTGCTAAACAACGCAAAGTTGTTGAAGAGGAAAGTCAAAGAAAACGAAAAACTTCAAGATGTAATTGTGGTGCAAAAATGTTGATTAGCAAAAGGACAATTGGCTTTGAGGAAAAATGGGTGGTTAAATATTTTTATAATCACCACAACCATGAGTTATTAGATGATAAAGAGGTTCAGTTTCTTCCTGTTTATCATAACATCCCATTTGTTGATAAAAACCGTATTATATTATTGTCAAAAGTTGGTTGCCCTGTAAGCCTCATAATAAGAGTGCTTGAGTTAGAGAAAGGAATAGATCCAGGAAAATGTCCACAAACAATTCTCATTGATCAAGATCTTGCACTCAAGGAAGCTATCTCAATGGAATTGCCAAACACAAAACATGCATTTTGCATATGGCTTATTGAGTTTTATAGGTTGTACCATTTAGAATGTGTAGATGATTTTGAGCGAGAATGGAACTTGATGGTTTCACATTTTGGTCTAAGTATGGATAGGCACATTGGCTTTCTCTATTCCCATCGTCAATTTTGGGCCCTAGCCTATTTGAAGGACTTCTTTTTTGCTGGGATGACAACAACTGGGCGTTCAAAATCTATAAACTCATATATTAAAAGATTTTTGGATGTCAAAACGAGTTTGATAGATTTCGTAAATCAAGTTGGTGTTGCGGTCAACATTAGAAATCAAGCTGGGGAGGAGGCAAGAATGCGTCAAAAGTACCATAATCCTCAAATTAGAACGGGTTTTCCTCTTGAGGAACATGCTGCATCTATACTCACACCATATGCCTTTGAGTTGCTCCAACATGAGATCCAATTATCTACAAAATATGCAGCAATTGAGACTGGCAATGACTCATACATAGTGCGACATCATACCAAAGTTGATGGAGGTCGTTCTGTTAGTTGGATAGAAGAAGAAGAATCAATTCATTGCTCTTGTAAAGAATTTGAATTTTCTGGTATATTGTGTAGACATGCTATTCGAGTATTACTCTCGAAATATTATTTTCACCTCCCTGCCAGATATCTTCCTTTCCGATGGAGCCAGGAAAGTTCATTAATCATAAAATCCAGTCATATAATCAATTGCAGTGATAACTCTTCTATTGTGTTGCGATCTCTAGTTCGATGTTTGGAAGTTGAATCTTTGAAGACAAAAGATCGAGTTGAAGGTTCTACTAAAGAGTTAGAGAAAGTCATTCAAATCATAAGAGGCATGCCTGAAATTCAAGATAGTTCAATTGAGTTGGAGTGTGACGTATCAAATAACAATGTGTGTGAGGTTGAAGTTGAAAATCACATCATTTCTAAGACAAAAGGTCGACCAAAAGGATCAAGGCCAAAAGGAGGAGTTGAAGTTGCAAAGAAACCTCGTCGTTGTCATTTTCCTAATTGTGGTGGAACTAATCATGACTCACGAAATTGTCCAAACAAAAAGAAAGGAATTGAAATATTCCCTTCTCAATCTCCTAATAAGATGACAAAGGGTTGGAGAAAGTCATCTTAG 1851 0.3593 MTFEGRDGASDWPLELLKDCASASEHNGKTISLTFQETQQESLPQANNIYDGVPYEGKMFNSDDEAYELYCAFARKNGFSIRRDHTYKSSKNQSEENPLGIYKREFVCHRAGSAKQRKVVEEESQRKRKTSRCNCGAKMLISKRTIGFEEKWVVKYFYNHHNHELLDDKEVQFLPVYHNIPFVDKNRIILLSKVGCPVSLIIRVLELEKGIDPGKCPQTILIDQDLALKEAISMELPNTKHAFCIWLIEFYRLYHLECVDDFEREWNLMVSHFGLSMDRHIGFLYSHRQFWALAYLKDFFFAGMTTTGRSKSINSYIKRFLDVKTSLIDFVNQVGVAVNIRNQAGEEARMRQKYHNPQIRTGFPLEEHAASILTPYAFELLQHEIQLSTKYAAIETGNDSYIVRHHTKVDGGRSVSWIEEEESIHCSCKEFEFSGILCRHAIRVLLSKYYFHLPARYLPFRWSQESSLIIKSSHIINCSDNSSIVLRSLVRCLEVESLKTKDRVEGSTKELEKVIQIIRGMPEIQDSSIELECDVSNNNVCEVEVENHIISKTKGRPKGSRPKGGVEVAKKPRRCHFPNCGGTNHDSRNCPNKKKGIEIFPSQSPNKMTKGWRKSS. 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09342 616 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 51 467 IPR031052 GO:0006355
Seca4g09342 616 MobiDBLite consensus disorder prediction 577 616 - -
Seca4g09342 616 ProSiteProfiles Zinc finger SWIM-type profile. 413 449 IPR007527 GO:0008270
Seca4g09342 616 Pfam SWIM zinc finger 413 449 IPR007527 GO:0008270
Seca4g09342 616 Pfam FAR1 DNA-binding domain 69 166 IPR004330 -
Seca4g09342 616 MobiDBLite consensus disorder prediction 602 616 - -
Seca4g09342 616 SMART 26again6 424 451 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09342 Seca-Chr4 221541749 221544323 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca4g09342 FAR1 1.1e-17 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09342 - - lja:Lj0g3v0071399.1 585.489