Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09339 ATGGAGTTTGACAATGAGTTTCCTTACTATTCCTCTTCACCATCTTCTACTTCTTCTCCAAGCCAACTCTCACCAAATTCTCAATCAGTGGTGGTGGTGCAGCAGCAGCAGGAGGCACAAAGCTCCTCTCACAAGAGGAAAGCAGGGAGAAAGAAGTTCAAGGAGACAAGGCACCCAGTGTATAGAGGTGTTCGGCAGAGAAACGGAAATAGATGGGTGTGTGAAGTGAGGGAACCAAACAAGAAATCAAGGATATGGCTTGGGAGTTACCCTACGCCAGAAATGGCAGCTAGGGCACATGACGTGGCTGTCCTAGCACTTAAGGGAACCTCAGCTGTGTTCAATTTCCCTGATTCAGCTTCTCTTCTTCCAGTTGCAAGGTCTTGTTCAGCTGTAGATATAAGAGAAGCTGCATCAAAAGCCGCATATGCACAGGAGAGTTTTCCACCAACCACCCCTTCTTCTTCCTCTTCTGTTAATAACAATTTATGCGTCAAAACAAAAAGGGTAGATAGGGATACGGTTATTAAAAGCCCATCAGCTTCTTCTTCTTCTTCGAGAGCGATATTTTTTGATGAGGAAGCGTTGTATAATATGCCGGGTCTTTTAGATAGTATGGCAGAGGGTTTGCTTATTACGCCACCATCCATGAAGAGAGCATTTGATTGGGATCATGATGTTGATTATGAAACGGACCTAACTCTATGGACAGACTGA 717 0.4463 MEFDNEFPYYSSSPSSTSSPSQLSPNSQSVVVVQQQQEAQSSSHKRKAGRKKFKETRHPVYRGVRQRNGNRWVCEVREPNKKSRIWLGSYPTPEMAARAHDVAVLALKGTSAVFNFPDSASLLPVARSCSAVDIREAASKAAYAQESFPPTTPSSSSSVNNNLCVKTKRVDRDTVIKSPSASSSSSRAIFFDEEALYNMPGLLDSMAEGLLITPPSMKRAFDWDHDVDYETDLTLWTD. 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09339 238 SMART rav1_2 60 123 IPR001471 GO:0003700|GO:0006355
Seca4g09339 238 Pfam AP2 domain 59 109 IPR001471 GO:0003700|GO:0006355
Seca4g09339 238 MobiDBLite consensus disorder prediction 1 59 - -
Seca4g09339 238 MobiDBLite consensus disorder prediction 8 42 - -
Seca4g09339 238 ProSiteProfiles AP2/ERF domain profile. 60 117 IPR001471 GO:0003700|GO:0006355
Seca4g09339 238 CDD AP2 61 119 IPR001471 GO:0003700|GO:0006355
Seca4g09339 238 Gene3D AP2/ERF domain 60 118 IPR036955 GO:0003700|GO:0006355
Seca4g09339 238 SUPERFAMILY DNA-binding domain 60 119 IPR016177 GO:0003677
Seca4g09339 238 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 12 237 IPR045277 GO:0003700
Seca4g09339 238 FunFam Ethylene-responsive transcription factor 2 59 118 - -
Seca4g09339 238 PRINTS Ethylene responsive element binding protein signature 83 99 IPR001471 GO:0003700|GO:0006355
Seca4g09339 238 PRINTS Ethylene responsive element binding protein signature 61 72 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09339 Seca-Chr4 221443946 221444662 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09339 8 237 AP2-EREBP Transcription Factor Family AT5G51990 45.690 3.41e-58 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Seca4g09339 AP2 5.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09339 - - gmx:100816109 267.314