Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09333 ATGAGGTTGGAGAAATGCTGGTTTTGTTCTTCAACCATATATCCTGGACACGGAATCCAGTTTGTCCGTAATGATGCTAAGATTTTTCGGTTCTGTAGATCCAAGTGCCACAAGAACTTTAAAATGAAGAGGAATCCTCGTAAAGTAAAATGGACAAAGGCATATCGGCGAGTGCATGGAAAGGATATGACACAGGATTCGACCTTTGAGTTTGAGAGAAAGAGAAACAGACCTGAGAGATACGACAGGAATCTTGCGGAGAATGTCCTCAAGGCCATTCCTAAGATTGATAAGATCAGGGTCAGCAGGGAGGAGAAACACCATAAGAATAGGTTCTTCTTTGACTCCACCATGAAAGGCAAAAAGGAAAAACTGCAGAGGGAGGCAGTGAGGGAGTTGGAGCAGGGCATCAGTTTGGTCAAAGCTCCTTCTGTGCTTCAAGAGGAGCCATCTCTCACTTTACCAAAGATCAAAGTCAAGGTTTCTCAACAGCAATCAGAGGAAAATCATCCCATGGAAGAGTGA 525 0.4381 MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRVHGKDMTQDSTFEFERKRNRPERYDRNLAENVLKAIPKIDKIRVSREEKHHKNRFFFDSTMKGKKEKLQREAVRELEQGISLVKAPSVLQEEPSLTLPKIKVKVSQQQSEENHPMEE. 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09333 174 Gene3D Ribosomal protein L24e 1 68 IPR038630 -
Seca4g09333 174 CDD Ribosomal_L24e_L24 1 54 IPR000988 -
Seca4g09333 174 PANTHER 60S RIBOSOMAL PROTEIN L24 1 173 IPR000988 -
Seca4g09333 174 SMART 4TRASH 6 44 IPR011017 -
Seca4g09333 174 FunFam probable ribosome biogenesis protein RLP24 1 67 - -
Seca4g09333 174 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 56 - -
Seca4g09333 174 MobiDBLite consensus disorder prediction 151 174 - -
Seca4g09333 174 Pfam Ribosomal protein L24e 1 65 IPR000988 -
Seca4g09333 174 ProSitePatterns Ribosomal protein L24e signature. 8 25 IPR023442 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09333 Seca-Chr4 221395723 221399015 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09333 1 174 Cytoplasmic Ribosomal Protein Gene Family AT2G44860 66.092 3.85e-79 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09333 K02896 - gmx:100306000 329.331
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g09333 4 221395723 221399015 Seca4g09333 4 221395723 221399015 ECH