Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09313 ATGGGGAGCAAGGTCACCGACCACCACCTCTCCACCGTCCGATCCATTGTCGGTTCCGAATTCACCGACATGGACATCATCAGAGCCCTTCACATGGCCAAAAACGATGTCACTGCAGCCATCAACATCATCTTCGACAGTACTCACACCACCAAATTCAAACCCCCCCGCACCAACAACAACCCGCCACCACGAGTTTCTCCTCCAAAAAAATTGACCCCTCCCGCCGTTACCACCAGCTCCAACCCCAATGCCGATGGAGGAGACAGCAATAACTGCTCTGTCGGGTCCGATGATTGGTGGTTCGTGGGTTCTAGCGAAGTGGCAGGGTTGTCCACTTGTAAAGGGAGGACTATAAATTCCGGTGATGCAGTGCTTTTCAAGTTCCCCACAAAGACACACTCTGCCTCTCCCTCTCCTGGTAAAGGGTTCGGAAGAGTAGCAACATGTTCGGAGATAGTTCGATTCTCCACTGAACAAGCTGGAGAGATTGGTAGAATACCAAACGAATGGGCTCGGTGTCTCTTGCCTCTTGTGCGGGATAATAAGGTTAGAGTTGAGGGGCACTGTAAATTTGCGCCTAATGTTTTGGGCATCATGGACACCATTGTCTTGTCAGTCAGTGTCTTTATCAATAGGTCAATGTTTGTTAAGCATCACCAGGTTTCTCTCAAAGATGCTACCAATTCCACGGATGAATCAGTGTTCCATCCCCTTCCAACCCTGTTTCGGTTGCTAGGGCTGAGCCCTTTTAAGAAGGCAGAGTTGACTCCGGGTGATTTCTATTCGAACAAGCGTCCTTTCAGCCAAAGGGTCACATTACTACATGCCAAGTTTGAGCGTCCTTCTCAAAATGATCATGAGAATGAAAATGAGGATTCCGTTTCTGAAATTGATGTTGACAACATTGTTGGTGTCGGATCCAGCTCAGAGTTAGAGGAAATGGATCCTCCTGGGAATCTTCTGTGTGAACTGCGGCCCTATCAAAAACAGGCTCTTTATTGGATGATCCAGATGGAGAAGGGACGAGCTATGGATGAGACAGCAATAGCCCTTCATCCGTGTTGGGAGGCATATCGCCTGGCTAACAAGAGGGAGCTTGTTATTTATTTGAACGCATTTTCTGGTGAAGCCACAATAGAATTTCCTAGCACCCTTCAAATGGCCAGAGGAGGAATTTTGGCAGATGCTATGGGGCTTGGAAAGACCATTATGACCATATCCCTTCTTCTTGCCCATTCAGGGAGGGGTGGATCACTAGGCAGTCAACCCATAACTCAGTCCTTTATTGAAGGTGGTGAAGTTAGTGATACTGATATGGTGCACAGTGTTTCAAACATACCAAAGAAGGCAGCCAAATTTACTGGTTTTGACAAACTGATAAAGCAAAAGAATGCTCTAACAAGTGGTGGCAACTTGATAATATGTCCCATGACTCTTCTTGGGCAGTGGAAGGCAGAGATTGAAACTCATGCGCACCCTGGGTCCCTGTCTGTATATGTTCATTATGGGCAAAGTAGGCCCAAAGATGCAAAAAATCTAGCTCAAAATGATGTTGTGATTACTACATACGGAATTTTGACCTCAGAATTTACCAGTGAGAATGCAGAGGATAATGGTGGACTCTTCTCAATTTGGTGGTTTAGAGTGGTTCTTGATGAGGCACATACTATAAAATCTTCTAAAAGCCAAATTTCTATGGCAGCTGCTGCTCTAACTGCTGACAGACGTTGGTGTCTTACTGGGACTCCTATCCAGAACAGCCTTGAGGATGTGTACAGTCTTCTTCGGTTTCTGAGAATAGAGCCTTGGGGTCATTGGGCCTGGTAA 1830 0.4656 MGSKVTDHHLSTVRSIVGSEFTDMDIIRALHMAKNDVTAAINIIFDSTHTTKFKPPRTNNNPPPRVSPPKKLTPPAVTTSSNPNADGGDSNNCSVGSDDWWFVGSSEVAGLSTCKGRTINSGDAVLFKFPTKTHSASPSPGKGFGRVATCSEIVRFSTEQAGEIGRIPNEWARCLLPLVRDNKVRVEGHCKFAPNVLGIMDTIVLSVSVFINRSMFVKHHQVSLKDATNSTDESVFHPLPTLFRLLGLSPFKKAELTPGDFYSNKRPFSQRVTLLHAKFERPSQNDHENENEDSVSEIDVDNIVGVGSSSELEEMDPPGNLLCELRPYQKQALYWMIQMEKGRAMDETAIALHPCWEAYRLANKRELVIYLNAFSGEATIEFPSTLQMARGGILADAMGLGKTIMTISLLLAHSGRGGSLGSQPITQSFIEGGEVSDTDMVHSVSNIPKKAAKFTGFDKLIKQKNALTSGGNLIICPMTLLGQWKAEIETHAHPGSLSVYVHYGQSRPKDAKNLAQNDVVITTYGILTSEFTSENAEDNGGLFSIWWFRVVLDEAHTIKSSKSQISMAAAALTADRRWCLTGTPIQNSLEDVYSLLRFLRIEPWGHWAW. 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09313 609 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 383 602 IPR014001 -
Seca4g09313 609 Gene3D - 374 430 IPR038718 -
Seca4g09313 609 MobiDBLite consensus disorder prediction 57 71 - -
Seca4g09313 609 Gene3D - 452 609 IPR038718 -
Seca4g09313 609 MobiDBLite consensus disorder prediction 73 91 - -
Seca4g09313 609 MobiDBLite consensus disorder prediction 50 91 - -
Seca4g09313 609 Pfam HIRAN domain 104 207 IPR014905 GO:0003676|GO:0008270|GO:0016818
Seca4g09313 609 SMART ultradead3 321 608 IPR014001 -
Seca4g09313 609 CDD DEXDc_SHPRH-like 325 609 - -
Seca4g09313 609 SMART HIRAN_2 103 211 IPR014905 GO:0003676|GO:0008270|GO:0016818
Seca4g09313 609 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 312 607 IPR027417 -
Seca4g09313 609 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 96 609 - -
Seca4g09313 609 Pfam SNF2-related domain 328 606 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09313 Seca-Chr4 220902622 220912892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09313 1 609 RAD5 or RAD16-like Gene Family AT5G22750 62.205 0.0 769
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca4g09313 SNF2_N 7.2e-65 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09313 K15505 - gmx:100794452 1003.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g09313 4 220902622 220912892 Seca4g09313 4 220902622 220912892 ECH