Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09312 ATGAAGCTTTCGCCAAAAGCCTCTGAAAAATCACAGGAACTTTCTGATTTGTCGATGGAACCACCGATTGCGAAGCGAAGGGGTCGCCCGCCAAAACGGAGAAGAAAAGACGATGAAACTGTGACGGTTGATCCGAAATTGATCCCCGAAACGAAGAAAACGATGATATCAATGGCATTGATTGGGCGATATGTGCTGAAAGAGTTCCCTAGAAGCAATGTTCTTCTCGGAAAAGTCGTGCATTACGAGAGAGGTTTATACAGAGTCACGTATGAGGGTGGCGGTTGCGAGTATTTGGATAGCAGCAAAATTCGTAGGTTAATTCTCGATGACAGTTATTTCGATGACGATTTGACTCAAAGGAAGGGTGAATTGGAGGAATTGCTGTTGCCAAAGATTGCAGATGCATTGGAGAAGGATTCGAGTCAATTGCACGGTGATTTAGCGATTGAAAACGAAGAGGAACGAGATGAAACGGATGTTGATTCGTGTTCTGATGCTGAGATACCTTTAACGGAGACGCCGTTGCCGCCGCCGTTGTCGCCGCCGTTGTCGTTACCGCCATCTTCAGGAACTATTGGTGTGCCAGAGCGGTATGTTTCGCACCTGTTTGCAGTTTATGGATTCCTACGATCGTTCAGCATTCGCTTGTTTCTGAGCCCGTTTACTTTGGACGAGTTCGTTGGCTCTCTTAACTGTCGAGTTTCGAACACGTTGTTTGATGCCATTCATGTTTCCCTGATGCGTGCTTTGAGGCGCCATCTTGAAAACCTTTCGGCCGAGGGCTCGCGGCTTGCATCAAAATGCCTTGGGTGCAATGATTGGAGCTTGCTTGATACATTGACTTGGCCTGTTTTTGTGATTCAGTATTTATCAGTTAATGGATACACAAAGGGACCTGAGTGGAAAGGATTTTATGACCAGATTTTTTGTGGCGAGTATTATTTATTGCCTGCCAGTAGGAAGTTAGTAATATTGCAAATTCTCTGCGATGATGTTTTGGACTCTGAGGAATTAAAAGCTGAAATGAACATGCGTGAAGAATCAGAGGTTGGGATGGATTATGACGCTGAAGATATCCTTCCTGCAGAAAATTGGCCAAGAAGAGTCCATCCAAGATATACCAAAACTACTGCTTGCAAGGACAATGAAACTAAGAAGTTTGTTTCAGAATTAAATGCTGTGAATCTACATGGTAATGCTGAGGATGGTGATGTTGATGGAAATGGAGATGAATGTCGCCTCTGTGGCATGGATGGGACCTTACTTTGTTGTGATGGATGTCCTGCTGTTTATCATTCAAGGTGTATTGGTGTGATGAAAGTGCATATACCAGAAGGGGAATGGTATTGTCCAGAGTGCAAAATAAATATGATTGGGCCTACAATTACACGGGGAACAATACTTAAAGGGGCTGAAATATTTGGAAAGGATATGCATGGGCAACTTTTCATGGGTACTTGTGACCACTTACTGGTGCTCAATATTGACAATGGTGAATTTTGTCTTAAATACTACAATCAGAATGACATTCCTCAAATTCTCCAAGTGCTTTATGCGTCCATGCAACATAGACCTATATACTATGATATTTGCATGGCAATGTTACAATATTGGAATATTCCAGAAAGCTTCTTACACCATTGTGTTACAACTGGACCACATGTAAACTCAGCAAATACAAAGACAGATGCAATTTTCTCTGCTGCATTACTTCCTCCTATGGTTGAAGAAGATCATAAAGCTGGCCGTTTGTTGAAAGCAGAGAACGGTCCAACATCAATGAGTGGGAATTTTAGTGATACTATGGTGCCATCTCTTGATGCTTCATTGGTTAACACTCAAAGTCTTGCTTGTGAAAGCAGTGGCAATGCTAGAAATAAGGAATCCCCTACCATGAATATGATGCTTCATGAGGAAACTGCGATGGATTTGGTTGTTTCAACTGTTAACTACCAATCTGGCATGAACTATCAAAATTCTGTTAATAGGTCAACTGCAGTCGATCCTACCAGGTGCTCCTTGGTAAGCAGCCAATTTCATAATTATGGTCATGCAAATGACATGGGGTTGCCTTTGAATTTGTCTTTGCAAACTAAAGGCGGTCAAGCTGGTTTTGGAAAGTCCAAAGACAATATGACTAATAATTTTGTGTACATGGGTTGCTCCTATAAACCTCAGTCATACTTTAATTACTATATGCATGGTGATTTTGCCGCATCTGCTGCTGCTAACCTGGCCATTCTTTCTTCAGAGGATTCTAGATCCGAGGGTCATGTGTTGGACAACCTGAGAAAAGCTACTTCTGAAAACACTTATTTGCTGGCAAAAGCATTCTCACTAACAGCTTCACGTTTCTTTTGGCCAAGTTCTGAGAAGAAGCTTGTGGAGGTTCCAAGAGAGAGGTGTGGCTGGTGCCTTTCTTGTAAAGCCTCTGTTTCAAGCAAGAAAGGATGCATGTTAAATCAAGCTGCTCTAAGTGCCACCAAAAGTGCTATGAAAATCCTTTCTGGTCTTGCACCTGTAAGGAGTGGAGAGGGAATTATCCCTAGCATTATTACATATATTATATATATGGAGGAAAGCTTATGTGGTTTAATAGATGGGCCCTTTCTAAATGAAAACTATAGAAAGCAATGGCGTAAACAAGTGGAATGGGCCACATCTTTTAGTGATATAAAGCCCCTATTACTCAAACTTGAGGAGAACATTCGTACAATTGCTTTTCGTGGTGACTGGGGGAAGCTGATGGATGATTGGTTGGTTGATTTTTTTACAATACAGAATGCTGCATGTTCTCTTGGAACAACGCAGAAGCGTGCAGCAGGTGGCAGGCATAAGAAACAGTTTTCTATCAATGAAGTTAGAGCTGGTGATTGCAATGAAAACTTTGTCTGGTGGCATGGTGCCAAAGTTACCAAATCCGTATTTCAGAAAGCTGTTTTGCCAAAATCAATGGTCAGAAAAGCAGCTCGCCAAGGTGGTTTTAAGAGAATTTTGGGCATTGTCTATGCTGATGGCTTTGAAATTCCTAAAAGAAGCCGACAGCTAGTTTGGAGAGCTGCAGTTCAAATGAGTAGGAATGCATCACAACTGGCACTTCAGGTTCGATATCTAGATTTTTTTATCAGATGGAGTGATCTTATTTGTCCTGAGCATAACCTCCTGGATGGGAAAGGTCAAGATACTGAAGCTTCTGCTTTTAGAAATGCAAAAGTTTATGACAAGAAACATGTAGAGGGAAAACTTTTTTATGGTATAGCTTTTGGGAGCCAAAAGCATCTTCCTTCTCGTGTAATGAAAAATGTTAAAGTAGAGCAAGGACCAGAAGGAAAGGAGAAGTACTGGTTTTCTGAAACGCACATTCCTTTATATTTGGTAAAAGAGTATGAAGTAGGCAGTGAAAAAGTGCCATTTGATAAAGAGCAGTTGAATATTGCATCTCAGTTGCACAAAAGGCGGTTCAAAGCTAACCGCAAGGACTTATTGTTTTACCTCACTTGCAAGAGAGACAAATTGGACATGTTGTCATGTTCTGCATGTCAGCTGGGTGTTTTATTTGGGAATGCTCTCAAATGCTGTGTATGTCAAGGTTATTGTCATAAGGGATGTTCCATAAGCTCAACAGTCTCTACATATGAAGAAGTTGAGTTCCTAACCACATGCAAACAATGTTATCATGCCAAATTACTCACTAAAAAAGAGAACAGTAATGAATCTCCCACCAGTCCCTCACTCTTGCAAGGACAAGAACATTGCTCTTTGACAGTTCTGAAGGGGCAAAGGCCTGAACATTATGATCAAGCACTGAGATCTACCAGGACAAAGGATAGTCGTCCTGACAGGAAACAAATTGCTTCTGATTCCCCTTTGGAAACAAAAAGCCGGCGCAGAAACTGTTCTTGGGGTATTATATGGAAAAAGAAGAATAGTGAAGATACAGGCATTGATTTCAGGCTCAAGAACATAATTCTAAGGGGAGGTTCAGGCTTGCCTCAATTGGAACCTGTTTGTCGCTTGTGCCATAAACCATACAGGTCTGATATAATGTATATTTGCTGTGAAACATGCAAAAATTGGTATCATGCTGAAGCTGTTGAACTTGAAGAGTCCAAAATTTTTGATGTGCTGGGCTTCAAATGTTGCAAGTGTCGCAGGATAAAGTCACCTGTGTGTCCTTACTCTGATTTGATGTGCAATAAGCAGGAGGGCAATAATTCACACTCTAGGGTTACAAAGAAAGAGCATTCTGGAGCAGATTCTGATTCTGGAACAGCTACTGACATGAGATTGTGTGAGCCTGCTACTCCTATCTTTCCCATAGAGGATGTCTCTAGACAAGAGAATGATCCTCTGTCGTCCTCTCTTTCGAGTGTTGAGCTGATTAAAGAACCCAAGTTAGATGCAGATTTTGCGTGTAATACTGTCTCTGGGCCAGGACTTCATAAATTACCAGTGAGAAGGCAACGTGAGGGGGACAATAATGGTTCTTTTGGAGGTAAAATTCTGCATGCTGGATTTTCAAGACACAATGAAATGGGTAATCTGTCCAAATCTGCAGAGGTTTTATCACCTTGTGTTGAAAATGGCTCTGCTGTGCTCGCAGACAGCAATCTTCCGAAAAACTCTCAAATTGTGAATTATGAGTACATGGAGTCTGAACCCCATACCTTCTCTTTGACTAAACTGCTGAGTCCAGATAATATTAGTCAATTTGAGGAAGCTGATGCATCTGGGGACTTGTCAGGATATACAAAAAATTCTTGCACATTAGGTGTTGCTGAAGCATCCGACTTGGGACCTACAATTTCATTGCAAGGAAATGTAAATACTTGTTTGCAATGTTTACAAATGGAACCCGCCCCTGATCTCTATTGTCAGATTTGTGGGATTTGGATTCACAGCCAATGTTCACCTTGGATTGAATCATCATCTAGGCTTGACAATTGGAAATGTGGTAATTGCCGGGAATGGCAATAG 4980 0.4151 MKLSPKASEKSQELSDLSMEPPIAKRRGRPPKRRRKDDETVTVDPKLIPETKKTMISMALIGRYVLKEFPRSNVLLGKVVHYERGLYRVTYEGGGCEYLDSSKIRRLILDDSYFDDDLTQRKGELEELLLPKIADALEKDSSQLHGDLAIENEEERDETDVDSCSDAEIPLTETPLPPPLSPPLSLPPSSGTIGVPERYVSHLFAVYGFLRSFSIRLFLSPFTLDEFVGSLNCRVSNTLFDAIHVSLMRALRRHLENLSAEGSRLASKCLGCNDWSLLDTLTWPVFVIQYLSVNGYTKGPEWKGFYDQIFCGEYYLLPASRKLVILQILCDDVLDSEELKAEMNMREESEVGMDYDAEDILPAENWPRRVHPRYTKTTACKDNETKKFVSELNAVNLHGNAEDGDVDGNGDECRLCGMDGTLLCCDGCPAVYHSRCIGVMKVHIPEGEWYCPECKINMIGPTITRGTILKGAEIFGKDMHGQLFMGTCDHLLVLNIDNGEFCLKYYNQNDIPQILQVLYASMQHRPIYYDICMAMLQYWNIPESFLHHCVTTGPHVNSANTKTDAIFSAALLPPMVEEDHKAGRLLKAENGPTSMSGNFSDTMVPSLDASLVNTQSLACESSGNARNKESPTMNMMLHEETAMDLVVSTVNYQSGMNYQNSVNRSTAVDPTRCSLVSSQFHNYGHANDMGLPLNLSLQTKGGQAGFGKSKDNMTNNFVYMGCSYKPQSYFNYYMHGDFAASAAANLAILSSEDSRSEGHVLDNLRKATSENTYLLAKAFSLTASRFFWPSSEKKLVEVPRERCGWCLSCKASVSSKKGCMLNQAALSATKSAMKILSGLAPVRSGEGIIPSIITYIIYMEESLCGLIDGPFLNENYRKQWRKQVEWATSFSDIKPLLLKLEENIRTIAFRGDWGKLMDDWLVDFFTIQNAACSLGTTQKRAAGGRHKKQFSINEVRAGDCNENFVWWHGAKVTKSVFQKAVLPKSMVRKAARQGGFKRILGIVYADGFEIPKRSRQLVWRAAVQMSRNASQLALQVRYLDFFIRWSDLICPEHNLLDGKGQDTEASAFRNAKVYDKKHVEGKLFYGIAFGSQKHLPSRVMKNVKVEQGPEGKEKYWFSETHIPLYLVKEYEVGSEKVPFDKEQLNIASQLHKRRFKANRKDLLFYLTCKRDKLDMLSCSACQLGVLFGNALKCCVCQGYCHKGCSISSTVSTYEEVEFLTTCKQCYHAKLLTKKENSNESPTSPSLLQGQEHCSLTVLKGQRPEHYDQALRSTRTKDSRPDRKQIASDSPLETKSRRRNCSWGIIWKKKNSEDTGIDFRLKNIILRGGSGLPQLEPVCRLCHKPYRSDIMYICCETCKNWYHAEAVELEESKIFDVLGFKCCKCRRIKSPVCPYSDLMCNKQEGNNSHSRVTKKEHSGADSDSGTATDMRLCEPATPIFPIEDVSRQENDPLSSSLSSVELIKEPKLDADFACNTVSGPGLHKLPVRRQREGDNNGSFGGKILHAGFSRHNEMGNLSKSAEVLSPCVENGSAVLADSNLPKNSQIVNYEYMESEPHTFSLTKLLSPDNISQFEEADASGDLSGYTKNSCTLGVAEASDLGPTISLQGNVNTCLQCLQMEPAPDLYCQICGIWIHSQCSPWIESSSRLDNWKCGNCREWQ. 1660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09312 1659 ProSiteProfiles Zinc finger PHD-type profile. 410 457 IPR019787 -
Seca4g09312 1659 PANTHER PHD FINGER FAMILY PROTEIN 144 1620 - -
Seca4g09312 1659 ProSitePatterns Zinc finger PHD-type signature. 413 454 IPR019786 -
Seca4g09312 1659 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 404 459 IPR013083 -
Seca4g09312 1659 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1333 1391 IPR013083 -
Seca4g09312 1659 ProSiteProfiles DDT domain profile. 197 257 IPR018501 -
Seca4g09312 1659 Pfam DDT domain 200 254 IPR018501 -
Seca4g09312 1659 MobiDBLite consensus disorder prediction 1269 1294 - -
Seca4g09312 1659 MobiDBLite consensus disorder prediction 1 41 - -
Seca4g09312 1659 SUPERFAMILY FYVE/PHD zinc finger 1333 1391 IPR011011 -
Seca4g09312 1659 MobiDBLite consensus disorder prediction 1407 1421 - -
Seca4g09312 1659 SMART PHD_3 1177 1226 IPR001965 -
Seca4g09312 1659 SMART PHD_3 1611 1656 IPR001965 -
Seca4g09312 1659 SMART PHD_3 1337 1385 IPR001965 -
Seca4g09312 1659 SMART PHD_3 412 455 IPR001965 -
Seca4g09312 1659 MobiDBLite consensus disorder prediction 172 186 - -
Seca4g09312 1659 CDD PHD2_CHD_II 413 454 - -
Seca4g09312 1659 Pfam PHD-finger 413 455 IPR019787 -
Seca4g09312 1659 SUPERFAMILY FYVE/PHD zinc finger 390 456 IPR011011 -
Seca4g09312 1659 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 311 344 IPR028942 -
Seca4g09312 1659 MobiDBLite consensus disorder prediction 1405 1427 - -
Seca4g09312 1659 SUPERFAMILY FYVE/PHD zinc finger 1607 1656 IPR011011 -
Seca4g09312 1659 SMART testlast3 197 257 IPR018501 -
Seca4g09312 1659 MobiDBLite consensus disorder prediction 148 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09312 Seca-Chr4 220869184 220877600 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09312 287 552 EF-hand Containing Proteins AT5G22760 48.252 5.73e-76 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Seca4g09312 DDT 1.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09312 - - gmx:100808614 2334.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g09312 4 220869184 220877600 Seca4g09312 4 220869184 220877600 ECH
Seca4g09312 4 220869184 220877600 Seca4g09312 4 220869184 220877600 PCT