Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09307 ATGGATGAGTTTGGGGATGGTTCATTTGTTAACCTAGATGACATTAGTGATCATAATGATGATTGTGGTGAGGACTTTGATATGAATGGTCAGGAAAATCATAATGATTTGGGTGGTCCTAGTGTAGGTGTAGGGTTAGGTGAAACAGACCATAGGGATAAAAGAATAGAAGACATGAGTGGTGATGACATCCGATGCATGGAGTTTGCTAGTGAAGAGGATGGTTGTCTCTTTTACCAAACATATGCAAAGTGTCATGGTTTTGTTGTTAAGAAAGATGAGGTATGTCACGATTTTAAAGGGAATGTTATCATGCGCCAGTTTGTGTGCAACAAAGAAGGTACTGGGAACAAAAAACATTTGATGAAGGTGGATAGGAAAAAAGAGCACAGACCAATAACTCGTGTGAGGTGTGAAGCTAAGCTAAGAATTCGCTTAAATTATAAGACATGTAAATGGAAGGTAGTATCTTTTGTTGAGACTCATAATCATGAGCTTCCCCCTTACAGTTATGTGCATTTATATCTTGCTTATAGAGGCCTAACTGATGCGGATAAAGCTCAAGTAGATAGGTTGCACGCATATGGTGTTAGAACATGCCACATAATGGGATACATGTTAGATCAAAAGGGGGGATATGCTTCCCTTGGGTTTTGTAGAAAGGATTTGTATAATTATATTGAACGTCGGAAACTTGAAAAGATTAAAGATGGGGATGCACATGCAGCCTTATGTTATATACAATCAAAGGCCAACAACGATCCCACACTTCGTTGTAGTTTCCTTGCTACGAATGATGGTTGTTTGAGAAATTTATTTTGGGCAGATGGGGGAAGTAGGGCTGATTATTATTGCTTTGGGGATGTTCTTGCATTTAACACAACTTATAGGAAAAACCGATATAACAAACATTTGGTTATATTTTCTGGTTGTAACCATCATGGTCAGACAGATGTTTTTGGTTGTGGATTGGTTGCCGATGAGACAATTGAAACTTATAAGTGGCTGTTAGAAGAATTTCTTCGTTCTATGTCATATAAACATCCTGTTGCAGTAGTTACAAATGGAGATAGTAGTATGAGAGAGGCTATCAAGCAGGTGTTCCCGAATGCTTTACATCGCCTTTGTGCATGGCATTTGCACAAAAATGCATGTGAAAATGTCAAGAATTTAGGATTCTTGGATGATTTTAAGGTAGCCATGTATTCTAATTTCACTGAGGAAAAATTTGAAGTGTATTGGAAGCGAATGGTTGCAAAACATGGTCTTGTAGGAAACAAGTGGGTGACTAAAACCTATGAAAATAGGTCAATGTGGGCTAGTGCATATTTTCGTGATAAATTATTTGGTCGGATTAGAACAACATCACAATGTGAGGCAATAAATTCCTTGGTGAAGGCGTATGTTAATAAGAAAGATACCATTCTTGAATTCATTAATAGGTTTGAGCAAGTTTTGAGAGAGTATATGAACAATGAGCTGATTGGAGATTTCAAGTCTACATTTACTCAACCAGTTTTAACTACCTCTCTTCAGAAAATTGAGAGTGAGGCAGCAAAAATATTCACATTGGAGAATTTTAGGGAAGTTAAATCTGAGATTGAGGTTGCTTGTTCCTTAAATGTAATTGCAAGAGAGGGAATTTGA 1647 0.3728 MDEFGDGSFVNLDDISDHNDDCGEDFDMNGQENHNDLGGPSVGVGLGETDHRDKRIEDMSGDDIRCMEFASEEDGCLFYQTYAKCHGFVVKKDEVCHDFKGNVIMRQFVCNKEGTGNKKHLMKVDRKKEHRPITRVRCEAKLRIRLNYKTCKWKVVSFVETHNHELPPYSYVHLYLAYRGLTDADKAQVDRLHAYGVRTCHIMGYMLDQKGGYASLGFCRKDLYNYIERRKLEKIKDGDAHAALCYIQSKANNDPTLRCSFLATNDGCLRNLFWADGGSRADYYCFGDVLAFNTTYRKNRYNKHLVIFSGCNHHGQTDVFGCGLVADETIETYKWLLEEFLRSMSYKHPVAVVTNGDSSMREAIKQVFPNALHRLCAWHLHKNACENVKNLGFLDDFKVAMYSNFTEEKFEVYWKRMVAKHGLVGNKWVTKTYENRSMWASAYFRDKLFGRIRTTSQCEAINSLVKAYVNKKDTILEFINRFEQVLREYMNNELIGDFKSTFTQPVLTTSLQKIESEAAKIFTLENFREVKSEIEVACSLNVIAREGI. 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09307 548 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 61 541 IPR031052 GO:0006355
Seca4g09307 548 Pfam FAR1 DNA-binding domain 78 166 IPR004330 -
Seca4g09307 548 MobiDBLite consensus disorder prediction 21 53 - -
Seca4g09307 548 Pfam MULE transposase domain 289 383 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09307 Seca-Chr4 220785654 220787300 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca4g09307 MULE 4.4e-24 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09307 - - ccaj:109792835 683.715