Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09295 ATGGCTTTAACTTGGCCGCACCTGCTGCAGTTTCGTTCTCAACCCTTGCTCGCGCGCACCAACTACGTCTTCTTCTCCGATCTTACCGAATTCCGCTCCGTTGAACCTCCATGCCTTCATTCCCTCACTCTTCTCCGCCGGAACAAGACCTCTGTTCCATCTCCGCCGGCGCTGAAACCGGTGAAATGCATCGGCAGATCCACGGAGGAGAAGCAGTGGAGCGACGCCGAAACCGCCGTATCTGACTCCGATGAAGCTGCAGATGATGCAAATGGTCAGGCTCCGAGCCGAGCTTCCGTTCCTGTAAACGACCGCGTTGAATCTCAGAGGATTGCCACCACCTCTTCTGGCGAATCTATCTCTCTCGGAATTCGGGAACCGGTTTATGAAGTTGTAGAAGTGAGATCAAATGGGACAGTATCGACTAGAAAAATCAACAGGAGACAATTACTGAAGTCAAGTGGTCTTCGTCCACGAGACATTCGAAGTGTGGATCCATCATTGTTTTTGACAAATTCAATGCCTTCCTTGCTGGTCCGGGAGTATGCTATACTTCTAAATCTGGGTTCACTACGAGCAATAGCAATGCAAGATTGTGTACTTATATTTGATTATAATCGTAAAGGAGGGCAAGCTTTTCTAGAGACATTGCTGCCACGGTTGAACCCCAAGAACAACAATGGGGGGCCATCAATGCCATTTGAACTTGAGGTTGTTGAAGCAGCATTGCTTTCAAGAATACAACGTTTGGAGCGGAGAATGATGGACTTAGAACCTCGTGTTCAAGCTCTTCTTGAGGCCTTGCCAAATCGAATAACTGGTGACATATTGGAGCAACTTCGTATTAGCAAACAAACTTTGGTTGAGTTAGGTTCTAGGGCAGGAGCTCTCAGACAGATGCTGCTTGACCTTCTGGAGGACCCTCACGAAATACGGCGGATATGTATCATGGGAAGAAACTGCACACTTAAGAAAGGAACCAATAATATGGAATGTTCATTGCCCTTAGAAAAGCAGATTGCTGAGGAGGAGGAGGAGGAAATTGAGATGCTTCTGGAAAATTATCTTCAAAGATGTGAATCTTGTCATGGTCAAGCTGAAAGGCTTCTTGATTCTGCAAGGGAAATGGAAGATTCTATAGCTGTCAGTTTGAGCTCACGGAGGCTTGAGGTTAGCAGAGTGGAACTGCTTCTCCAGGTTGGAACATTCTGTGTGGCAGTTGGTGCCCTTGTTGCAGGTATATTTGGCATGAACCTGAAGTCCTATCTTGAGGAACATGTGGTATGTGGTTTACGGTCTAAAACATTATTCCATGCATGGCTCGCTTGTTTCTTATTGGAAGTTGTTGCCTATCAATCTTGTTAA 1365 0.4645 MALTWPHLLQFRSQPLLARTNYVFFSDLTEFRSVEPPCLHSLTLLRRNKTSVPSPPALKPVKCIGRSTEEKQWSDAETAVSDSDEAADDANGQAPSRASVPVNDRVESQRIATTSSGESISLGIREPVYEVVEVRSNGTVSTRKINRRQLLKSSGLRPRDIRSVDPSLFLTNSMPSLLVREYAILLNLGSLRAIAMQDCVLIFDYNRKGGQAFLETLLPRLNPKNNNGGPSMPFELEVVEAALLSRIQRLERRMMDLEPRVQALLEALPNRITGDILEQLRISKQTLVELGSRAGALRQMLLDLLEDPHEIRRICIMGRNCTLKKGTNNMECSLPLEKQIAEEEEEEIEMLLENYLQRCESCHGQAERLLDSAREMEDSIAVSLSSRRLEVSRVELLLQVGTFCVAVGALVAGIFGMNLKSYLEEHVVCGLRSKTLFHAWLACFLLEVVAYQSC. 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09295 454 FunFam Magnesium transporter MRS2-11, chloroplastic 124 205 - -
Seca4g09295 454 Coils Coil 338 358 - -
Seca4g09295 454 CDD Mrs2_Mfm1p-like 131 426 IPR039204 -
Seca4g09295 454 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 93 426 IPR039204 -
Seca4g09295 454 FunFam Magnesium transporter MRS2-11, chloroplastic 207 389 - -
Seca4g09295 454 Gene3D Magnesium transport protein CorA, transmembrane region 206 389 - -
Seca4g09295 454 MobiDBLite consensus disorder prediction 49 103 - -
Seca4g09295 454 MobiDBLite consensus disorder prediction 64 78 - -
Seca4g09295 454 Gene3D - 124 205 - -
Seca4g09295 454 Coils Coil 247 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09295 Seca-Chr4 220624301 220631969 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09295 122 426 MRS2 Gene Family AT5G22830 85.246 1.72e-179 508
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09295 K16075 - gmx:100808371 686.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g09295 4 220624301 220631969 Seca4g09295 4 220624301 220631969 ECH