Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09294 ATGGCGGAGGACCGCAATGAGGCCAGTGATTTCAGTTCGGAGGACGAAGGCACTGAGGATTACAGGCGTGGAGGGTACCATGCGGTTCGGATTGGGGACACTTTCAAGAATGGGTGCTATGTGGTGCAAAGCAAGCTCGGTTGGGGTCATTTTTCCACCGTGTGGCTCGCTTGGGATACTCAGAAATCGCGATATGTTGCCTTGAAAATTCAAAAGAGTGCTCAGCACTACACTGAAGCAGCGTTGGATGAAATAAAGATTCTCAAACAAATTGCTGATGGGGATCCAGATAACAATAAATGTGTTGTGAAGCTTTTGGATCACTTTAAGCATTCAGGGCCTAATGGCCAGCATGTTTGTATGGTTTTTGAATTCCTTGGTGATAACCTTCTCACCCTTATCAAGTACAGTGATTATCGAGGGGTTCCCCTTCCCATGGTCAAAGAAATTTGTTTCCATGTTTTGGTTGGTTTGGATTACTTGCATCGTGAGCTTTCTGTAATACACACTGATTTGAAGCCAGAGAATGTCTTGCTTCTGTCTCCAATAGATCCATCTAAGGATCCTAGAAAATCAGGTGTTCCACTTATCCTTCCAAACACCAAGGACAAGATTGTGGCCAAGAATGGGACAACAAAAGATGATAAAAGTTTGAATGGAGATCTGACCAAGAACCAGAAAAAGAAGATACGAAAAAAGGCTAAAAAAGCTGCTCAGGGTTGTGTTGGGAAGGAAAATCCTGAGGAAGCAGAGGAGGATTCTAAAGCACCTGAGCAAGATGGTTGTAGTAATGATGTGAAACCAGTTGTAGAATCCGGTGAAGGTAAACCTAATAGTCCTGTGTGTAAAGATGAATCAACAAAGACACTTGAAACTAAGGATGTTCCACAAGGAAGTCATGGTCATAGGAGAGGTAGCCGCTCTACCAGAAAGAAGTTGCTTGCAGCTGTTGATCTTAAGTGCAAGCTAGTTGATTTCGGTAATGCTTGTTGGACATATAAACAGTTCACAAATGATATTCAGACAAGGCAATATAGATGTCCTGAGGTTCTTCTTGGATCTAAATACTCAACTCCAGCAGATCTATGGTCCTTTGCTTGCATTTGCTTTGAGCTTGCCACTGGTGATGTTCTTTTTGATCCTCATAGTGGGGACAACTATGATAGGGATGAGATTTTTACTCTTCAGGATCATCTTGCGTTGATGATGGAGCTTCTTGGAATGATGCCTCGCAAGATTGCACTTGGTGGTCGCTATTCCCGGGACTTTTTCAATAGATATGGTGATTTGAGGCACATTCGTCGGTTACGTTTCTGGCCTCTTAATAAGGTCCTGATGGAGAAATATGATTTCACTGAGCAAGATGCAATTGACATGGCTGACTTTCTTGTTCCATTACTTGATTTTGTCCCTGAAAAGAGGCCAACAGCTGCTCAGTGCCTTAATCATCCATGGATCAGTGCAGGTCCTCGGACTCGTGAGCCCTCATTGACAAATCTGCAACCTGATGATGCTATTGACAGGGAAACGTCTGAAAAGATGAGGAGGGAAAAGGCTGAACAGGAGGCTGTGGAAGTTGGTATGGGGAATATCGTCATTGATGGAACTCCAAAGCCACTCAAAGATTCCCAGTCCACAAAGCCATCAGAATAG 1653 0.4362 MAEDRNEASDFSSEDEGTEDYRRGGYHAVRIGDTFKNGCYVVQSKLGWGHFSTVWLAWDTQKSRYVALKIQKSAQHYTEAALDEIKILKQIADGDPDNNKCVVKLLDHFKHSGPNGQHVCMVFEFLGDNLLTLIKYSDYRGVPLPMVKEICFHVLVGLDYLHRELSVIHTDLKPENVLLLSPIDPSKDPRKSGVPLILPNTKDKIVAKNGTTKDDKSLNGDLTKNQKKKIRKKAKKAAQGCVGKENPEEAEEDSKAPEQDGCSNDVKPVVESGEGKPNSPVCKDESTKTLETKDVPQGSHGHRRGSRSTRKKLLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEIFTLQDHLALMMELLGMMPRKIALGGRYSRDFFNRYGDLRHIRRLRFWPLNKVLMEKYDFTEQDAIDMADFLVPLLDFVPEKRPTAAQCLNHPWISAGPRTREPSLTNLQPDDAIDRETSEKMRREKAEQEAVEVGMGNIVIDGTPKPLKDSQSTKPSE. 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09294 550 SUPERFAMILY Protein kinase-like (PK-like) 35 492 IPR011009 -
Seca4g09294 550 MobiDBLite consensus disorder prediction 1 20 - -
Seca4g09294 550 MobiDBLite consensus disorder prediction 491 550 - -
Seca4g09294 550 MobiDBLite consensus disorder prediction 505 523 - -
Seca4g09294 550 Pfam Protein kinase domain 318 486 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g09294 550 Pfam Protein kinase domain 40 179 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g09294 550 CDD STKc_SRPK 29 486 - -
Seca4g09294 550 FunFam Serine/threonine-protein kinase SRPK-like protein 311 486 - -
Seca4g09294 550 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672|GO:0006468
Seca4g09294 550 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 10 510 - -
Seca4g09294 550 Gene3D Transferase(Phosphotransferase) domain 1 123 487 - -
Seca4g09294 550 MobiDBLite consensus disorder prediction 286 301 - -
Seca4g09294 550 ProSiteProfiles Protein kinase domain profile. 40 486 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g09294 550 MobiDBLite consensus disorder prediction 205 309 - -
Seca4g09294 550 FunFam CMGC/SRPK protein kinase 26 125 - -
Seca4g09294 550 Gene3D Phosphorylase Kinase; domain 1 16 122 - -
Seca4g09294 550 ProSitePatterns Protein kinases ATP-binding region signature. 46 69 IPR017441 GO:0005524
Seca4g09294 550 SMART serkin_6 40 486 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g09294 550 MobiDBLite consensus disorder prediction 245 260 - -
Seca4g09294 550 MobiDBLite consensus disorder prediction 207 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09294 Seca-Chr4 220618713 220624285 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09294 1 538 EF-hand Containing Proteins AT5G22840 67.399 0.0 738
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Seca4g09294 Pkinase 1.7e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09294 K08832 - gmx:100809984 972.615
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04234 4 76168214 76172574 Seca4g09294 4 220618713 220624285 PCT