Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09272 ATGGACCTGTTGGTTGTGCCAACATGGCTGGAAAAATTGGTGACGATCACTACATTCTTCTCAACTTGTGAGGTCCACCCAAATCAATCCAAGAAAGAATGCAACATGTACTGCCTCGATTGCAGCAGTGACCAAGCATTTTGCCACTCTTGCATATCATCTGCTCATGAGGATCATCGAGTGATTCAAATAAGGAGGTCGTCGTATCAGGATGTTGTAAGAGTTGGGGATATTCAAAAAGATTTGGACATCCTTGGGGTTCAGTCATATGTGATAAACAACTTTAGAGTTGTTTTCTTAAACGAGAGGGCTCGTACTCAACAATCTAAGAGAAATAATAATACCAACTTTGGTAGAAATAGCAAAAACAACTCCTCTTGTGAGATATGCGCAAAAAGTCTCGCTGACCCTTATTGTTTCTGCTCTTTGGCATGCAAGCTTGCATGGATAAAGGAGAGTGAGAATGGAAACTTGGTCCTGGCCGCGAAGAAAGAAGAAAAACTGAGGGAAATTAAGGAAAAGTTGGAGGAAAAAGACAAAAAATCGCATGAACGAAACAATAAACGAGGATACCAATGTCTTGCTGCTAATGCTACCCCAGGAGCTCGCCCAACTTCGAGAAGAAAGGGAATACCTCATAGGGCACCTTTTTTTTAG 657 0.417 MDLLVVPTWLEKLVTITTFFSTCEVHPNQSKKECNMYCLDCSSDQAFCHSCISSAHEDHRVIQIRRSSYQDVVRVGDIQKDLDILGVQSYVINNFRVVFLNERARTQQSKRNNNTNFGRNSKNNSSCEICAKSLADPYCFCSLACKLAWIKESENGNLVLAAKKEEKLREIKEKLEEKDKKSHERNNKRGYQCLAANATPGARPTSRRKGIPHRAPFF. 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09272 218 SUPERFAMILY B-box zinc-binding domain 21 66 - -
Seca4g09272 218 Coils Coil 158 188 - -
Seca4g09272 218 MobiDBLite consensus disorder prediction 174 188 - -
Seca4g09272 218 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 6 217 - -
Seca4g09272 218 CDD Bbox2 23 64 - -
Seca4g09272 218 MobiDBLite consensus disorder prediction 174 218 - -
Seca4g09272 218 Pfam PLATZ transcription factor 65 147 IPR006734 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09272 Seca-Chr4 220099245 220100712 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Seca4g09272 PLATZ 1.8e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09272 - - cam:101499108 204.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g09272 4 220099245 220100712 Seca4g09272 4 220099245 220100712 ECH