Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09270 ATGGCTGTTGCTGGACTGCAAAATGCTGCCGTGCCCGTGCTTGAGTCTACTTTCCATAGGGACTCCAATTCTCAGTCACCAGGGAGGCAAGGAGATGGAGGGAGGGGAGGCACCCGGTCATCTTCACTCTTGCAAATGTGGAGAGAGATTGAAGATGAGCAGGTGGTGAGGCAAGTTCAAGGAAGACCTGGGGAAGTATTAATTCGACAAAGGAGTGATGGGTTGGCTGCAGACCTCCCACAGGAAAATATGCAAGATGGCCACCAGAGGGAAGGGCATGTGACAGAAGATGCAGTTTTGGGTGAGAATGAATCAGAAACATGGTCACAGTCACAAAGTCAGAATGGGTCTCATGATGAACAGGAGGAATCGAACAATTTTAGCCGTGAAAACTCTTCTGATATTGGAGAAATTGAAAGGGAAAGAGTGAGGCAAATTTTCAGGGAATGGATGAATAGTGGTTCTTCTAGGGATCATGCATCAAGTATTTCCCGAGGAAATAGTGGTTCAAGGGGAGAATGGCTTGGGGAAACTGAGCAGGAAAGGGTGAGTATTGTAAGGGAATGGGTACAGATGAGTAGCCAGCAGAGAGGTGTTTCGTTGGGCGAAAATAGGGAAGAACAATCTGCTGAATTTGGTACCCAAATTGAATGTGTTCGTGATGGATCTGTTGTCAATCAGAATGAAGGCCAAACTGAGCATACACGTAGAGGAATCCGTAAATTACGTGGTCGGCAGTTTCTGCTTGATATACTTAAGAAGGCTGAGATGGAAAGGCAAAGAGAAGTTCAGGAATTGTTGGACCATCGGGCCGTATCTCATTTTCCCCATCGCAATCGCATTCAGGCCTTGCTTAGAGGCAGGTTCTTGAGAAATGATAGATTGGTTGATAATAACAGGCCCACTTCCATTTCAGACAGTGAATTAGGCTTATTGAGACAAAAACAGACTGTATCAGGTCTAAGGGAAGGATTCTTTTTTAGAAAGGACAATTCTGGTTGCAGTCAAGCAACCGGCAACCTATCTGATACGTCATCTGACATTGATATTGATGTTAATACAATTGAACAAACTGGATCTACCAGTTCACAAGTGGTCCCCACTGTACATTCTGAACAATCAGAGCCTAATAATATGGGAAGTGACAGACTTTGTATATCTAGTGGTCAGATTTGTTCACAAGGAACTGCTTGTGAGAATTTAGATTTGCAAGACTCTTCTGCTCATGTAGAAACAAGAGATTGGGAATCATCTTCCAGTATCAGGGCTGAAAGAAGAGATGGCACTGAACAAAATGTTGATATGATGCCAACTGCTCATGTAGAAACAAGAGATTGGGAATCGTCTTCCAGTATCAGGGCTGAAAGAAGAGATGGCACTGAACAAAATGTTGATATGATGCCAACCGAAGATACTGGTAATGACCTTACCCAACAAAGCTTGCAAATTGAAGATATGGAGCATAGCAATATGCAAGAACTAAGTGGGGTGCATGCCGAGCAATCTCAACTGGGTGATATAACTGGTGATGAAAGCAATTTATCAAATCCCAACAATCATGTAGAGGGCAATATTGTTGATGATGTAAATTCAATAGAATCTGTTGTTCTGGAAAGAGAGGAACAGGAAGAAGTGATTACTGAAAATGAAGGAATTGACTGGCATCAAACCAACGTTGAATGGAGAGATAGCGCCCAGGAAAGTGTGGATGATAATCAGCTCAATAGCACATCAAATGAATGGCCCCAGAACATCCTGGGAAATGAAGATGTAGAAAATTCTCGTCTGCAAGAGCAAGAAGCCTCTGAAGTGTGGCAAGAAGATGGTGGCTTTCAAGAGGCTGTGGAAATTTGGTTGGGAGGACCTTCTGATAATGAAGTAACTCCAGTTGGTAGAATTCGTGGATTTTATTTCCCAGAAGATGACAATGTGTACAGCGTTGAACTCAGGGAACTGCTAAGTAGGAGAAGTGTCTCAAACCTCTTACGCAGCACTTTTCGTGAAAGTCTTGACCAGTTGATACAATCATATGTTGAAAGGCAAGGTCATGCTCATGTTGAATGGGAGCTGCAAGAAACAACCCCTTCTTCTCCCTTGGCAGAACGAGACCTGGAGCAGCAGGGTAGGGATCGGATCATTGGTCGGGATACTGTTAATAGCTCACTTAACCTACCCTTGCCACCAACTCCTCCTCCTTTGCCTCTATGGGATCGGCACTCACGTCATGACAACTGGTCACAGAATGACATAAATAATCAGCGCCTAGGAATGGAGTGGGACATTATTAATGACTTGAGAATTGACATGGTTAGGCTACAGCAAAGGATGAATAATATGCAGAGAATGCTGGAGACCTGCATGGATATGCAGCTTGAGTTGCAACGCTCAATAAGACAAGAAGTCTCTGCAGCCCTGAATCGCTCAACTGGTTCATCAGTCGTGGCTGACCAAGTTAAATTCATCACAGGAATACATGACCATGTTTCTCCAGACGATAAATCTAAATGGGAGTGTGTGAGAAAAGGACTTTGCTGTATATGCTGTGAAAGCAATATTGATTCTTTGTTGTACAGATGTGGGCACATGTGCACATGTTCAAAATGTGCCAATGATTTGCTCCAAAGTAGAAGAAAGTGTCCAATGTGTCACGCACCAGTGGTGGAAGTGATACGTGCTTATTCTATACAATAA 2691 0.4355 MAVAGLQNAAVPVLESTFHRDSNSQSPGRQGDGGRGGTRSSSLLQMWREIEDEQVVRQVQGRPGEVLIRQRSDGLAADLPQENMQDGHQREGHVTEDAVLGENESETWSQSQSQNGSHDEQEESNNFSRENSSDIGEIERERVRQIFREWMNSGSSRDHASSISRGNSGSRGEWLGETEQERVSIVREWVQMSSQQRGVSLGENREEQSAEFGTQIECVRDGSVVNQNEGQTEHTRRGIRKLRGRQFLLDILKKAEMERQREVQELLDHRAVSHFPHRNRIQALLRGRFLRNDRLVDNNRPTSISDSELGLLRQKQTVSGLREGFFFRKDNSGCSQATGNLSDTSSDIDIDVNTIEQTGSTSSQVVPTVHSEQSEPNNMGSDRLCISSGQICSQGTACENLDLQDSSAHVETRDWESSSSIRAERRDGTEQNVDMMPTAHVETRDWESSSSIRAERRDGTEQNVDMMPTEDTGNDLTQQSLQIEDMEHSNMQELSGVHAEQSQLGDITGDESNLSNPNNHVEGNIVDDVNSIESVVLEREEQEEVITENEGIDWHQTNVEWRDSAQESVDDNQLNSTSNEWPQNILGNEDVENSRLQEQEASEVWQEDGGFQEAVEIWLGGPSDNEVTPVGRIRGFYFPEDDNVYSVELRELLSRRSVSNLLRSTFRESLDQLIQSYVERQGHAHVEWELQETTPSSPLAERDLEQQGRDRIIGRDTVNSSLNLPLPPTPPPLPLWDRHSRHDNWSQNDINNQRLGMEWDIINDLRIDMVRLQQRMNNMQRMLETCMDMQLELQRSIRQEVSAALNRSTGSSVVADQVKFITGIHDHVSPDDKSKWECVRKGLCCICCESNIDSLLYRCGHMCTCSKCANDLLQSRRKCPMCHAPVVEVIRAYSIQ. 897
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09270 896 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 831 894 IPR013083 -
Seca4g09270 896 MobiDBLite consensus disorder prediction 446 464 - -
Seca4g09270 896 MobiDBLite consensus disorder prediction 101 137 - -
Seca4g09270 896 CDD mRING-HC-C3HC5_NEU1 844 893 - -
Seca4g09270 896 MobiDBLite consensus disorder prediction 153 176 - -
Seca4g09270 896 MobiDBLite consensus disorder prediction 564 585 - -
Seca4g09270 896 ProSiteProfiles Zinc finger RING-type profile. 844 883 IPR001841 -
Seca4g09270 896 SUPERFAMILY RING/U-box 843 889 - -
Seca4g09270 896 MobiDBLite consensus disorder prediction 409 431 - -
Seca4g09270 896 MobiDBLite consensus disorder prediction 14 40 - -
Seca4g09270 896 MobiDBLite consensus disorder prediction 153 174 - -
Seca4g09270 896 MobiDBLite consensus disorder prediction 102 121 - -
Seca4g09270 896 MobiDBLite consensus disorder prediction 17 40 - -
Seca4g09270 896 Pfam Zinc finger, C3HC4 type (RING finger) 841 888 - -
Seca4g09270 896 Coils Coil 762 789 - -
Seca4g09270 896 MobiDBLite consensus disorder prediction 122 137 - -
Seca4g09270 896 MobiDBLite consensus disorder prediction 358 379 - -
Seca4g09270 896 MobiDBLite consensus disorder prediction 409 474 - -
Seca4g09270 896 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 478 896 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Seca4g09270 Seca-Chr4 220063913 220069990 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09270 794 890 C3H Transcription Factor Family AT3G06140 27.523 8.99e-06 47.0
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09270 - - gmx:100804887 1231.47