Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca4g09270 | ATGGCTGTTGCTGGACTGCAAAATGCTGCCGTGCCCGTGCTTGAGTCTACTTTCCATAGGGACTCCAATTCTCAGTCACCAGGGAGGCAAGGAGATGGAGGGAGGGGAGGCACCCGGTCATCTTCACTCTTGCAAATGTGGAGAGAGATTGAAGATGAGCAGGTGGTGAGGCAAGTTCAAGGAAGACCTGGGGAAGTATTAATTCGACAAAGGAGTGATGGGTTGGCTGCAGACCTCCCACAGGAAAATATGCAAGATGGCCACCAGAGGGAAGGGCATGTGACAGAAGATGCAGTTTTGGGTGAGAATGAATCAGAAACATGGTCACAGTCACAAAGTCAGAATGGGTCTCATGATGAACAGGAGGAATCGAACAATTTTAGCCGTGAAAACTCTTCTGATATTGGAGAAATTGAAAGGGAAAGAGTGAGGCAAATTTTCAGGGAATGGATGAATAGTGGTTCTTCTAGGGATCATGCATCAAGTATTTCCCGAGGAAATAGTGGTTCAAGGGGAGAATGGCTTGGGGAAACTGAGCAGGAAAGGGTGAGTATTGTAAGGGAATGGGTACAGATGAGTAGCCAGCAGAGAGGTGTTTCGTTGGGCGAAAATAGGGAAGAACAATCTGCTGAATTTGGTACCCAAATTGAATGTGTTCGTGATGGATCTGTTGTCAATCAGAATGAAGGCCAAACTGAGCATACACGTAGAGGAATCCGTAAATTACGTGGTCGGCAGTTTCTGCTTGATATACTTAAGAAGGCTGAGATGGAAAGGCAAAGAGAAGTTCAGGAATTGTTGGACCATCGGGCCGTATCTCATTTTCCCCATCGCAATCGCATTCAGGCCTTGCTTAGAGGCAGGTTCTTGAGAAATGATAGATTGGTTGATAATAACAGGCCCACTTCCATTTCAGACAGTGAATTAGGCTTATTGAGACAAAAACAGACTGTATCAGGTCTAAGGGAAGGATTCTTTTTTAGAAAGGACAATTCTGGTTGCAGTCAAGCAACCGGCAACCTATCTGATACGTCATCTGACATTGATATTGATGTTAATACAATTGAACAAACTGGATCTACCAGTTCACAAGTGGTCCCCACTGTACATTCTGAACAATCAGAGCCTAATAATATGGGAAGTGACAGACTTTGTATATCTAGTGGTCAGATTTGTTCACAAGGAACTGCTTGTGAGAATTTAGATTTGCAAGACTCTTCTGCTCATGTAGAAACAAGAGATTGGGAATCATCTTCCAGTATCAGGGCTGAAAGAAGAGATGGCACTGAACAAAATGTTGATATGATGCCAACTGCTCATGTAGAAACAAGAGATTGGGAATCGTCTTCCAGTATCAGGGCTGAAAGAAGAGATGGCACTGAACAAAATGTTGATATGATGCCAACCGAAGATACTGGTAATGACCTTACCCAACAAAGCTTGCAAATTGAAGATATGGAGCATAGCAATATGCAAGAACTAAGTGGGGTGCATGCCGAGCAATCTCAACTGGGTGATATAACTGGTGATGAAAGCAATTTATCAAATCCCAACAATCATGTAGAGGGCAATATTGTTGATGATGTAAATTCAATAGAATCTGTTGTTCTGGAAAGAGAGGAACAGGAAGAAGTGATTACTGAAAATGAAGGAATTGACTGGCATCAAACCAACGTTGAATGGAGAGATAGCGCCCAGGAAAGTGTGGATGATAATCAGCTCAATAGCACATCAAATGAATGGCCCCAGAACATCCTGGGAAATGAAGATGTAGAAAATTCTCGTCTGCAAGAGCAAGAAGCCTCTGAAGTGTGGCAAGAAGATGGTGGCTTTCAAGAGGCTGTGGAAATTTGGTTGGGAGGACCTTCTGATAATGAAGTAACTCCAGTTGGTAGAATTCGTGGATTTTATTTCCCAGAAGATGACAATGTGTACAGCGTTGAACTCAGGGAACTGCTAAGTAGGAGAAGTGTCTCAAACCTCTTACGCAGCACTTTTCGTGAAAGTCTTGACCAGTTGATACAATCATATGTTGAAAGGCAAGGTCATGCTCATGTTGAATGGGAGCTGCAAGAAACAACCCCTTCTTCTCCCTTGGCAGAACGAGACCTGGAGCAGCAGGGTAGGGATCGGATCATTGGTCGGGATACTGTTAATAGCTCACTTAACCTACCCTTGCCACCAACTCCTCCTCCTTTGCCTCTATGGGATCGGCACTCACGTCATGACAACTGGTCACAGAATGACATAAATAATCAGCGCCTAGGAATGGAGTGGGACATTATTAATGACTTGAGAATTGACATGGTTAGGCTACAGCAAAGGATGAATAATATGCAGAGAATGCTGGAGACCTGCATGGATATGCAGCTTGAGTTGCAACGCTCAATAAGACAAGAAGTCTCTGCAGCCCTGAATCGCTCAACTGGTTCATCAGTCGTGGCTGACCAAGTTAAATTCATCACAGGAATACATGACCATGTTTCTCCAGACGATAAATCTAAATGGGAGTGTGTGAGAAAAGGACTTTGCTGTATATGCTGTGAAAGCAATATTGATTCTTTGTTGTACAGATGTGGGCACATGTGCACATGTTCAAAATGTGCCAATGATTTGCTCCAAAGTAGAAGAAAGTGTCCAATGTGTCACGCACCAGTGGTGGAAGTGATACGTGCTTATTCTATACAATAA | 2691 | 0.4355 | MAVAGLQNAAVPVLESTFHRDSNSQSPGRQGDGGRGGTRSSSLLQMWREIEDEQVVRQVQGRPGEVLIRQRSDGLAADLPQENMQDGHQREGHVTEDAVLGENESETWSQSQSQNGSHDEQEESNNFSRENSSDIGEIERERVRQIFREWMNSGSSRDHASSISRGNSGSRGEWLGETEQERVSIVREWVQMSSQQRGVSLGENREEQSAEFGTQIECVRDGSVVNQNEGQTEHTRRGIRKLRGRQFLLDILKKAEMERQREVQELLDHRAVSHFPHRNRIQALLRGRFLRNDRLVDNNRPTSISDSELGLLRQKQTVSGLREGFFFRKDNSGCSQATGNLSDTSSDIDIDVNTIEQTGSTSSQVVPTVHSEQSEPNNMGSDRLCISSGQICSQGTACENLDLQDSSAHVETRDWESSSSIRAERRDGTEQNVDMMPTAHVETRDWESSSSIRAERRDGTEQNVDMMPTEDTGNDLTQQSLQIEDMEHSNMQELSGVHAEQSQLGDITGDESNLSNPNNHVEGNIVDDVNSIESVVLEREEQEEVITENEGIDWHQTNVEWRDSAQESVDDNQLNSTSNEWPQNILGNEDVENSRLQEQEASEVWQEDGGFQEAVEIWLGGPSDNEVTPVGRIRGFYFPEDDNVYSVELRELLSRRSVSNLLRSTFRESLDQLIQSYVERQGHAHVEWELQETTPSSPLAERDLEQQGRDRIIGRDTVNSSLNLPLPPTPPPLPLWDRHSRHDNWSQNDINNQRLGMEWDIINDLRIDMVRLQQRMNNMQRMLETCMDMQLELQRSIRQEVSAALNRSTGSSVVADQVKFITGIHDHVSPDDKSKWECVRKGLCCICCESNIDSLLYRCGHMCTCSKCANDLLQSRRKCPMCHAPVVEVIRAYSIQ. | 897 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca4g09270 | 896 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 831 | 894 | IPR013083 | - | |
Seca4g09270 | 896 | MobiDBLite | consensus disorder prediction | 446 | 464 | - | - | |
Seca4g09270 | 896 | MobiDBLite | consensus disorder prediction | 101 | 137 | - | - | |
Seca4g09270 | 896 | CDD | mRING-HC-C3HC5_NEU1 | 844 | 893 | - | - | |
Seca4g09270 | 896 | MobiDBLite | consensus disorder prediction | 153 | 176 | - | - | |
Seca4g09270 | 896 | MobiDBLite | consensus disorder prediction | 564 | 585 | - | - | |
Seca4g09270 | 896 | ProSiteProfiles | Zinc finger RING-type profile. | 844 | 883 | IPR001841 | - | |
Seca4g09270 | 896 | SUPERFAMILY | RING/U-box | 843 | 889 | - | - | |
Seca4g09270 | 896 | MobiDBLite | consensus disorder prediction | 409 | 431 | - | - | |
Seca4g09270 | 896 | MobiDBLite | consensus disorder prediction | 14 | 40 | - | - | |
Seca4g09270 | 896 | MobiDBLite | consensus disorder prediction | 153 | 174 | - | - | |
Seca4g09270 | 896 | MobiDBLite | consensus disorder prediction | 102 | 121 | - | - | |
Seca4g09270 | 896 | MobiDBLite | consensus disorder prediction | 17 | 40 | - | - | |
Seca4g09270 | 896 | Pfam | Zinc finger, C3HC4 type (RING finger) | 841 | 888 | - | - | |
Seca4g09270 | 896 | Coils | Coil | 762 | 789 | - | - | |
Seca4g09270 | 896 | MobiDBLite | consensus disorder prediction | 122 | 137 | - | - | |
Seca4g09270 | 896 | MobiDBLite | consensus disorder prediction | 358 | 379 | - | - | |
Seca4g09270 | 896 | MobiDBLite | consensus disorder prediction | 409 | 474 | - | - | |
Seca4g09270 | 896 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 478 | 896 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca4g09270 | Seca-Chr4 | 220063913 | 220069990 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca4g09270 | 794 | 890 | C3H Transcription Factor Family | AT3G06140 | 27.523 | 8.99e-06 | 47.0 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca4g09270 | - | - | gmx:100804887 | 1231.47 |