LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca4g09270	ATGGCTGTTGCTGGACTGCAAAATGCTGCCGTGCCCGTGCTTGAGTCTACTTTCCATAGGGACTCCAATTCTCAGTCACCAGGGAGGCAAGGAGATGGAGGGAGGGGAGGCACCCGGTCATCTTCACTCTTGCAAATGTGGAGAGAGATTGAAGATGAGCAGGTGGTGAGGCAAGTTCAAGGAAGACCTGGGGAAGTATTAATTCGACAAAGGAGTGATGGGTTGGCTGCAGACCTCCCACAGGAAAATATGCAAGATGGCCACCAGAGGGAAGGGCATGTGACAGAAGATGCAGTTTTGGGTGAGAATGAATCAGAAACATGGTCACAGTCACAAAGTCAGAATGGGTCTCATGATGAACAGGAGGAATCGAACAATTTTAGCCGTGAAAACTCTTCTGATATTGGAGAAATTGAAAGGGAAAGAGTGAGGCAAATTTTCAGGGAATGGATGAATAGTGGTTCTTCTAGGGATCATGCATCAAGTATTTCCCGAGGAAATAGTGGTTCAAGGGGAGAATGGCTTGGGGAAACTGAGCAGGAAAGGGTGAGTATTGTAAGGGAATGGGTACAGATGAGTAGCCAGCAGAGAGGTGTTTCGTTGGGCGAAAATAGGGAAGAACAATCTGCTGAATTTGGTACCCAAATTGAATGTGTTCGTGATGGATCTGTTGTCAATCAGAATGAAGGCCAAACTGAGCATACACGTAGAGGAATCCGTAAATTACGTGGTCGGCAGTTTCTGCTTGATATACTTAAGAAGGCTGAGATGGAAAGGCAAAGAGAAGTTCAGGAATTGTTGGACCATCGGGCCGTATCTCATTTTCCCCATCGCAATCGCATTCAGGCCTTGCTTAGAGGCAGGTTCTTGAGAAATGATAGATTGGTTGATAATAACAGGCCCACTTCCATTTCAGACAGTGAATTAGGCTTATTGAGACAAAAACAGACTGTATCAGGTCTAAGGGAAGGATTCTTTTTTAGAAAGGACAATTCTGGTTGCAGTCAAGCAACCGGCAACCTATCTGATACGTCATCTGACATTGATATTGATGTTAATACAATTGAACAAACTGGATCTACCAGTTCACAAGTGGTCCCCACTGTACATTCTGAACAATCAGAGCCTAATAATATGGGAAGTGACAGACTTTGTATATCTAGTGGTCAGATTTGTTCACAAGGAACTGCTTGTGAGAATTTAGATTTGCAAGACTCTTCTGCTCATGTAGAAACAAGAGATTGGGAATCATCTTCCAGTATCAGGGCTGAAAGAAGAGATGGCACTGAACAAAATGTTGATATGATGCCAACTGCTCATGTAGAAACAAGAGATTGGGAATCGTCTTCCAGTATCAGGGCTGAAAGAAGAGATGGCACTGAACAAAATGTTGATATGATGCCAACCGAAGATACTGGTAATGACCTTACCCAACAAAGCTTGCAAATTGAAGATATGGAGCATAGCAATATGCAAGAACTAAGTGGGGTGCATGCCGAGCAATCTCAACTGGGTGATATAACTGGTGATGAAAGCAATTTATCAAATCCCAACAATCATGTAGAGGGCAATATTGTTGATGATGTAAATTCAATAGAATCTGTTGTTCTGGAAAGAGAGGAACAGGAAGAAGTGATTACTGAAAATGAAGGAATTGACTGGCATCAAACCAACGTTGAATGGAGAGATAGCGCCCAGGAAAGTGTGGATGATAATCAGCTCAATAGCACATCAAATGAATGGCCCCAGAACATCCTGGGAAATGAAGATGTAGAAAATTCTCGTCTGCAAGAGCAAGAAGCCTCTGAAGTGTGGCAAGAAGATGGTGGCTTTCAAGAGGCTGTGGAAATTTGGTTGGGAGGACCTTCTGATAATGAAGTAACTCCAGTTGGTAGAATTCGTGGATTTTATTTCCCAGAAGATGACAATGTGTACAGCGTTGAACTCAGGGAACTGCTAAGTAGGAGAAGTGTCTCAAACCTCTTACGCAGCACTTTTCGTGAAAGTCTTGACCAGTTGATACAATCATATGTTGAAAGGCAAGGTCATGCTCATGTTGAATGGGAGCTGCAAGAAACAACCCCTTCTTCTCCCTTGGCAGAACGAGACCTGGAGCAGCAGGGTAGGGATCGGATCATTGGTCGGGATACTGTTAATAGCTCACTTAACCTACCCTTGCCACCAACTCCTCCTCCTTTGCCTCTATGGGATCGGCACTCACGTCATGACAACTGGTCACAGAATGACATAAATAATCAGCGCCTAGGAATGGAGTGGGACATTATTAATGACTTGAGAATTGACATGGTTAGGCTACAGCAAAGGATGAATAATATGCAGAGAATGCTGGAGACCTGCATGGATATGCAGCTTGAGTTGCAACGCTCAATAAGACAAGAAGTCTCTGCAGCCCTGAATCGCTCAACTGGTTCATCAGTCGTGGCTGACCAAGTTAAATTCATCACAGGAATACATGACCATGTTTCTCCAGACGATAAATCTAAATGGGAGTGTGTGAGAAAAGGACTTTGCTGTATATGCTGTGAAAGCAATATTGATTCTTTGTTGTACAGATGTGGGCACATGTGCACATGTTCAAAATGTGCCAATGATTTGCTCCAAAGTAGAAGAAAGTGTCCAATGTGTCACGCACCAGTGGTGGAAGTGATACGTGCTTATTCTATACAATAA	2691	0.4355	MAVAGLQNAAVPVLESTFHRDSNSQSPGRQGDGGRGGTRSSSLLQMWREIEDEQVVRQVQGRPGEVLIRQRSDGLAADLPQENMQDGHQREGHVTEDAVLGENESETWSQSQSQNGSHDEQEESNNFSRENSSDIGEIERERVRQIFREWMNSGSSRDHASSISRGNSGSRGEWLGETEQERVSIVREWVQMSSQQRGVSLGENREEQSAEFGTQIECVRDGSVVNQNEGQTEHTRRGIRKLRGRQFLLDILKKAEMERQREVQELLDHRAVSHFPHRNRIQALLRGRFLRNDRLVDNNRPTSISDSELGLLRQKQTVSGLREGFFFRKDNSGCSQATGNLSDTSSDIDIDVNTIEQTGSTSSQVVPTVHSEQSEPNNMGSDRLCISSGQICSQGTACENLDLQDSSAHVETRDWESSSSIRAERRDGTEQNVDMMPTAHVETRDWESSSSIRAERRDGTEQNVDMMPTEDTGNDLTQQSLQIEDMEHSNMQELSGVHAEQSQLGDITGDESNLSNPNNHVEGNIVDDVNSIESVVLEREEQEEVITENEGIDWHQTNVEWRDSAQESVDDNQLNSTSNEWPQNILGNEDVENSRLQEQEASEVWQEDGGFQEAVEIWLGGPSDNEVTPVGRIRGFYFPEDDNVYSVELRELLSRRSVSNLLRSTFRESLDQLIQSYVERQGHAHVEWELQETTPSSPLAERDLEQQGRDRIIGRDTVNSSLNLPLPPTPPPLPLWDRHSRHDNWSQNDINNQRLGMEWDIINDLRIDMVRLQQRMNNMQRMLETCMDMQLELQRSIRQEVSAALNRSTGSSVVADQVKFITGIHDHVSPDDKSKWECVRKGLCCICCESNIDSLLYRCGHMCTCSKCANDLLQSRRKCPMCHAPVVEVIRAYSIQ.	897

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca4g09270	896	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	831	894	IPR013083	-
	Seca4g09270	896	MobiDBLite	consensus disorder prediction	446	464	-	-
	Seca4g09270	896	MobiDBLite	consensus disorder prediction	101	137	-	-
	Seca4g09270	896	CDD	mRING-HC-C3HC5_NEU1	844	893	-	-
	Seca4g09270	896	MobiDBLite	consensus disorder prediction	153	176	-	-
	Seca4g09270	896	MobiDBLite	consensus disorder prediction	564	585	-	-
	Seca4g09270	896	ProSiteProfiles	Zinc finger RING-type profile.	844	883	IPR001841	-
	Seca4g09270	896	SUPERFAMILY	RING/U-box	843	889	-	-
	Seca4g09270	896	MobiDBLite	consensus disorder prediction	409	431	-	-
	Seca4g09270	896	MobiDBLite	consensus disorder prediction	14	40	-	-
	Seca4g09270	896	MobiDBLite	consensus disorder prediction	153	174	-	-
	Seca4g09270	896	MobiDBLite	consensus disorder prediction	102	121	-	-
	Seca4g09270	896	MobiDBLite	consensus disorder prediction	17	40	-	-
	Seca4g09270	896	Pfam	Zinc finger, C3HC4 type (RING finger)	841	888	-	-
	Seca4g09270	896	Coils	Coil	762	789	-	-
	Seca4g09270	896	MobiDBLite	consensus disorder prediction	122	137	-	-
	Seca4g09270	896	MobiDBLite	consensus disorder prediction	358	379	-	-
	Seca4g09270	896	MobiDBLite	consensus disorder prediction	409	474	-	-
	Seca4g09270	896	PANTHER	RING/U-BOX SUPERFAMILY PROTEIN	478	896	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca4g09270	Seca-Chr4	220063913	220069990	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca4g09270	794	890	C3H Transcription Factor Family	AT3G06140	27.523	8.99e-06	47.0

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca4g09270	-		-	gmx:100804887	1231.47