Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09269 ATGGCCAAAGGCACGGATTCGGATGAGTTTGTGATGCTTTCTAGGGTCCGTACGGGTCTCAAGAGGGAGTTTGCATTCGCCATGAAGGCCCAATCAGAGATCGGTGGTGGTTCTTTAGGTCGAACCCGCGCTAGCAAGAACCGGAATGAGGTTCCGGTTCAGACCGCTCCGGCCAGAAAGAGGTCAAGGAAGTCCGCTTCTGTGGAGGAGGATGCGGTGGTGAAAAACGCGGAGGATGTGGCCGTGGTGAAAGGCGCAGAGGATGTGGTGGGCGATGCCATGAGCGAGGAGGATGCTAAGAGTGATGTGGTGGATCTTGCGAGCGATGATGAACCCAAGAACAACCAAGAGGGAGAATCTGTTGCTGCAGTGCCCATTTGTGAAGAGGAACCAAAGAGTGATGTGGTGGTGGAAACTGTTATAAACGAAGAAGAACCTCGTGTAGTGATTGAGTCTTTGAAGAAAGAAGAGGTTAATAATGATGAGATAGCGCAAAAGAAGGAAGATGAGGTTAATAATGATGAAATAGCACAACCCCTTTGTGAAACTGGGGTCAAAGAGGAGGATTTGCAGCAAACTGGCGTCAAAGAGGAGGATTTGCAGCAAACTGGCGTCAAAGAGGAGGTTTTGCAGGATATGGAGAAGGGTGCTGCTCCAGATGAAAAGAGCTTGGAGAAGGGTTCTGCATCAGAGGAAAATTGTGGCACTAAAGGGGCAGTCCCGGTTTTGGTTAGTGATAAAAAGCCGAAGAAAAAAATGCCCTTAGAGAAGCCAATGAGGCGGTTTACCAGGTCAGCATTGAAGGAAAAATCTGATGAAACAAAAGTAATAAATGATGGGGAACATACTAGTGCTGATATTGATGATAATGTTAAAATGGAAACTGAGGCTTCCCCATTAACAACCACTCCAACTCCATCGAAAACGCCCAAGAGTAGCTCGAAGAAGTTCCCTACCAAGCTAAAGGATCTTCTAGCTACAGGGATTATTGAGGGACTGCCAGTGAAGTATGTTAGGGGAACGAAGGCACGGAAACCTGGAGATGCTGGGCTTCAAGGAGAGATTAGAGGCTCTGGGATTTTGTGCTATTGTGGGAGTTGTAAAGGGGTTGAGGTTGTCACGCCCACTGTGTTTGAGCTGCATGCTGGTAGTGCTAACAAACGTCCCCCAGAGTATACTTACCTTGAGAATGGAAATACCCTCCGAGATGTCATGAATGCCTGTTGGAGTTTTCCATTGGAAACCTTGGAGGAAGCCGTCCAAAAGGTCCTCGGTCACTTCACTATGAAGAAATCTACCATATGTTTGAACTGCAGAGCATCTATGTCTGACGATGGAAAGGGTGTGTCAAGACTAGTATGTGATTCATGCATGGAGTTAAAAGACTCTCAACCTAGCCCCCCTCAAACAGCCATGGCAAGCAGTTGTGCCCCTCAAACAGCCATGGCAAGCAGTTGTGCCATTCAATCAGCCATGGCAAGCAGCTGTGCCCCCCAAACAGCCATGGCAAGCAGTTGTGCCCCTCAAACAGCCAAGGCAAGCAGCTGTGCCCCTCAAACAACAATGGCAAACTGTTACTCCCCTCAAACAGCTGTGGCAAGCAGTAAAAGTGTTTCATCAGCATTTCAACCCAGATCACCAGAACCAGTTATGGTTCCAAAGTCATTAAACAATGGGATTAAGCACAGCGAGTCTCGTGGTAAGAGTCAGGGAAGATTAACTAGAAAGGATCTACGCTTGCATAAGTTGGTATTTGAAGAAGACGTGTTGCCTGATGGAACTGAAGTAGCCTACTATGCTCATGGAAAGAAATTGTTGGTTGGATACAAAAAGGGATATGGAATTTTTTGTACCTGCTGCAACTCTGAGGTCAGTGCCTCTCAGTTTGAAGCTCATGCTGGCTGGGCATCCCGACGCAAGCCTTACTTGCACATATACACATCCAATGGAGTCTCCCTCCATGAGTTGTCTATCTCTTTATCGAAAGATCGGAGGTTTTCTACCACTGATAATGATGACCTTTGCAGCATATGTGAGGATGGAGGGGATCTTTTGTGTTGTGATGGATGCCCCAGAGCTTTTCACATAGATTGTGTTCCTCTACCATGCATTCCAAGTGGGACTTGGTATTGTAAATATTGCCAGAATCTTTTCCAGAAAGACAGACATGGGCAACATTATGTGAATGCTATAAACCGAAGATGTATTCGTGTTGTCAAAACTGTTGAAATTGACCATGGTGGATGTGCCTTGTGCAGATGTCATGATTTCAGTAAAATCTTTGGTCCCCGAACAGTAATTATTTGTGATCAGTGTGAGAAAGAATATCATGTTGGGTGTTTGAAGGAGCATAACATGCAGAATCTAGAGAAATTGCCTGAAGGGAATTGGTTCTGCAACACGAGTTGCAGTCAAATTCATGCTGCTCTGACAAATTTAGTGGCTTGTGGGGAGAAGAATCTCCCAGATTCTTTTCAAAGTTTGATTAAAAAGAAGCATGAAGAGAAAGGTTTAGACAATGGGGTTGGTCTTGACATTAAATGGAGAGTTCTGAATTGGAAATTAGCTGCTTCTGCTGAAATTAGGCCATTGCTTTCGAAGGCTGTTGCCATTTTCCATGAGAGGTTTGATCCTATAGTTGATTCTTCCTCTGGCCGTGATTTCATTCCAACAATGATATATGGAAGGAACATCCGGGGCCAAGATTTTGGTGGAATGTACTGTGCAGTGCTCACCGTCAACCAAGTTGTCGTGTGTGCTGCAATATTTCGTGTCTTTGGGGCGGAAGTAGCAGAGCTTCCGTTAGTAGCAACAACTGCTGATCACCAAGGACAGGGCTACTTTCAATGCTTGTTTTCATGCATTGAGAATCTACTTGGATCTTTAAACGTGAAAAACTTTGTCCTACCTGCTGCTGATGAAGCTGAATCAATATGGACTAGTAAATTTGGGTTTACAAAGCTAGGGCTGGAGGAGATCAACAATTATAAGAAATTTTATCACATGATGATATTTCAAGGGACCTCAGTACTGCAGAAGCCCGTTCCTTTTGCACCCTGA 3060 0.4533 MAKGTDSDEFVMLSRVRTGLKREFAFAMKAQSEIGGGSLGRTRASKNRNEVPVQTAPARKRSRKSASVEEDAVVKNAEDVAVVKGAEDVVGDAMSEEDAKSDVVDLASDDEPKNNQEGESVAAVPICEEEPKSDVVVETVINEEEPRVVIESLKKEEVNNDEIAQKKEDEVNNDEIAQPLCETGVKEEDLQQTGVKEEDLQQTGVKEEVLQDMEKGAAPDEKSLEKGSASEENCGTKGAVPVLVSDKKPKKKMPLEKPMRRFTRSALKEKSDETKVINDGEHTSADIDDNVKMETEASPLTTTPTPSKTPKSSSKKFPTKLKDLLATGIIEGLPVKYVRGTKARKPGDAGLQGEIRGSGILCYCGSCKGVEVVTPTVFELHAGSANKRPPEYTYLENGNTLRDVMNACWSFPLETLEEAVQKVLGHFTMKKSTICLNCRASMSDDGKGVSRLVCDSCMELKDSQPSPPQTAMASSCAPQTAMASSCAIQSAMASSCAPQTAMASSCAPQTAKASSCAPQTTMANCYSPQTAVASSKSVSSAFQPRSPEPVMVPKSLNNGIKHSESRGKSQGRLTRKDLRLHKLVFEEDVLPDGTEVAYYAHGKKLLVGYKKGYGIFCTCCNSEVSASQFEAHAGWASRRKPYLHIYTSNGVSLHELSISLSKDRRFSTTDNDDLCSICEDGGDLLCCDGCPRAFHIDCVPLPCIPSGTWYCKYCQNLFQKDRHGQHYVNAINRRCIRVVKTVEIDHGGCALCRCHDFSKIFGPRTVIICDQCEKEYHVGCLKEHNMQNLEKLPEGNWFCNTSCSQIHAALTNLVACGEKNLPDSFQSLIKKKHEEKGLDNGVGLDIKWRVLNWKLAASAEIRPLLSKAVAIFHERFDPIVDSSSGRDFIPTMIYGRNIRGQDFGGMYCAVLTVNQVVVCAAIFRVFGAEVAELPLVATTADHQGQGYFQCLFSCIENLLGSLNVKNFVLPAADEAESIWTSKFGFTKLGLEEINNYKKFYHMMIFQGTSVLQKPVPFAP. 1020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09269 1019 Pfam Tify domain binding domain 353 408 IPR032308 -
Seca4g09269 1019 Pfam Tify domain binding domain 608 656 IPR032308 -
Seca4g09269 1019 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 744 806 IPR013083 -
Seca4g09269 1019 MobiDBLite consensus disorder prediction 35 72 - -
Seca4g09269 1019 Coils Coil 153 173 - -
Seca4g09269 1019 MobiDBLite consensus disorder prediction 267 316 - -
Seca4g09269 1019 SUPERFAMILY FYVE/PHD zinc finger 742 801 IPR011011 -
Seca4g09269 1019 SUPERFAMILY FYVE/PHD zinc finger 662 717 IPR011011 -
Seca4g09269 1019 SMART PHD_3 674 715 IPR001965 -
Seca4g09269 1019 SMART PHD_3 751 804 IPR001965 -
Seca4g09269 1019 MobiDBLite consensus disorder prediction 181 254 - -
Seca4g09269 1019 CDD PHD1_AIRE 674 714 - -
Seca4g09269 1019 Pfam PHD-finger 675 716 IPR019787 -
Seca4g09269 1019 Gene3D - 845 1013 - -
Seca4g09269 1019 FunFam PHD finger family protein 845 1014 - -
Seca4g09269 1019 ProSiteProfiles Zinc finger PHD-type profile. 672 717 IPR019787 -
Seca4g09269 1019 MobiDBLite consensus disorder prediction 189 228 - -
Seca4g09269 1019 ProSitePatterns Zinc finger PHD-type signature. 675 714 IPR019786 -
Seca4g09269 1019 MobiDBLite consensus disorder prediction 537 573 - -
Seca4g09269 1019 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 667 732 IPR013083 -
Seca4g09269 1019 PANTHER AUTOIMMUNE REGULATOR 102 1015 - -
Seca4g09269 1019 MobiDBLite consensus disorder prediction 267 293 - -
Seca4g09269 1019 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 904 1000 IPR016181 -
Seca4g09269 1019 MobiDBLite consensus disorder prediction 295 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09269 Seca-Chr4 220016995 220024740 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09269 318 1015 PHD Transcription Factor Family AT2G36720 46.314 0.0 628
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca4g09269 TDBD 2.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09269 - - gmx:100803825 1220.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04208 4 75515500 75521410 Seca4g09269 4 220016995 220024740 PCT