Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09268 ATGGGTCAGATCCAGTATTCCGAGAAGTACTTTGACGATACTTACGAGTATAGGCACGTTGTTCTGCCTCCTGAAGTCTCCAAACTACTTCCCAAGAATCGCCTTCTCTCTGAAAACGATTGGCGTGCGATTGGCGTTCAGCAGAGCCGTGGATGGGTTCATTATGCGATTCATCGCCCTGAGCCCCACATAATGCTTTTCAGGAGGCCTTTGAACTTTCAGCAGCAGCAGTAA 234 0.4872 MGQIQYSEKYFDDTYEYRHVVLPPEVSKLLPKNRLLSENDWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNFQQQQ. 78
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09268 77 FunFam Cyclin-dependent kinases regulatory subunit 1 77 - -
Seca4g09268 77 PANTHER CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7 3 77 - -
Seca4g09268 77 PRINTS Cyclin-dependent kinase regulatory subunit signature 40 54 IPR000789 GO:0016538
Seca4g09268 77 PRINTS Cyclin-dependent kinase regulatory subunit signature 55 69 IPR000789 GO:0016538
Seca4g09268 77 PRINTS Cyclin-dependent kinase regulatory subunit signature 3 17 IPR000789 GO:0016538
Seca4g09268 77 PRINTS Cyclin-dependent kinase regulatory subunit signature 18 32 IPR000789 GO:0016538
Seca4g09268 77 Gene3D - 1 77 IPR036858 GO:0016538
Seca4g09268 77 SMART CKS_2 3 72 IPR000789 GO:0016538
Seca4g09268 77 Pfam Cyclin-dependent kinase regulatory subunit 4 70 IPR000789 GO:0016538
Seca4g09268 77 SUPERFAMILY Cell cycle regulatory proteins 1 76 IPR036858 GO:0016538
Seca4g09268 77 ProSitePatterns Cyclin-dependent kinases regulatory subunits signature 1. 6 24 IPR000789 GO:0016538
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09268 Seca-Chr4 220010738 220011462 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09268 1 76 Core Cell Cycle Gene Families AT2G27970 89.474 2.82e-50 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09268 K02219 - osa:4331610 164.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g09268 4 220010738 220011462 Seca4g09268 4 220010738 220011462 ECH