Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09266 ATGCTCAACATATATTTATCTTTCTCTGAACCAAGAAACTCAGAACACAACAAACAAACCAAACCCAATCAAGGTGTAGTATTGGAAGAAGATTTATTGACAATGATTTCAAGGGTCACACATGGTTTTCCAAATCAAGGGCTGCAGATGTTTCCTGATACAGAAGATTTGTTATCACCCTCTGTTGAAGTAATCTCTGGCTCAGGTTCACCCTCTAGTTCCCTCCTCTTCAATCTCTCTGTTCTTAAAGACAAGGTTAATCAGGTGCAAACCCTTGTGGGTGTTATTCTCTCCCCAAATCAAAGCCTATCTGAGTCAACTTCCATGGCTATATCCAGCATGAATTCCACAATCCAGGAAATCATAGTGACTGCTACATCAATGATGTTCACTTGTCAACACATGGCTCTCAGTTTCCCTTCTTCAGGTAATACTACTACTTGCACCAATGAATTGCACCACCAGCAACAATCTAATCATGAAAAGTTATTGCCTCATACAAATAGGGGTGTGGTTAGTAACATAGGCTCAGAGACAGATATTAGAGGCCAGAGTTTGTTTTCTAATACTGAGTCAGAGGCACTAGATTGGTTTGGTGAAAGCTATAACAATAATAGCAATATTAACTTTAAGCTTAAGGATGATGATCAAAATATTGCAATTAATGGTAAGGGGGATGAGCCTAATGAAGACTATAGAGGGATTTCACCAAAGAATAATGATGATGATGATGATGATGAAGATGGTGGTATAATTGAATTGGATGCTGCTGATTTGTTGGCTAAGTACACACATTATTGCCAAGTTTGTGGCAAAGGGTTTAAGAGAGATGCAAATTTGAGGATGCATATGAGAGCTCATGGGGATGAGTACAAGACCAATGCTGCTTTGAGTAACCCAATTAAGAAAAAGGGAAGCCTATTGGGTGGGGGAAGGGAGTGTTTGATGAATATGAAGCCTAAGAAATATTCATGTCCTCAACAAGGATGTAGGTGGAACCAAAAGCATGCCAAGTTCCAACCTTTGAAATCCATGATTTGTGCTAAGAATCATTACAAGAGAAGCCATTGCCCCAAAATGTATGTGTGCAAGAGGTGCAACCAGAAACAGTTCTCAGTGCTTTCTGATCTGAGGACCCATGAGAAGCACTGTGGGGATCTCAAGTGGCAGTGTTCCTGTGGCACTACCTTTTCTAGGAAAGACAAGCTTATGGGTCATGTTTCTTTGTTCGTTGGCCACCACCCAGCTATCAATGCATGA 1260 0.4048 MLNIYLSFSEPRNSEHNKQTKPNQGVVLEEDLLTMISRVTHGFPNQGLQMFPDTEDLLSPSVEVISGSGSPSSSLLFNLSVLKDKVNQVQTLVGVILSPNQSLSESTSMAISSMNSTIQEIIVTATSMMFTCQHMALSFPSSGNTTTCTNELHHQQQSNHEKLLPHTNRGVVSNIGSETDIRGQSLFSNTESEALDWFGESYNNNSNINFKLKDDDQNIAINGKGDEPNEDYRGISPKNNDDDDDDEDGGIIELDAADLLAKYTHYCQVCGKGFKRDANLRMHMRAHGDEYKTNAALSNPIKKKGSLLGGGRECLMNMKPKKYSCPQQGCRWNQKHAKFQPLKSMICAKNHYKRSHCPKMYVCKRCNQKQFSVLSDLRTHEKHCGDLKWQCSCGTTFSRKDKLMGHVSLFVGHHPAINA. 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09266 419 Gene3D Classic Zinc Finger 260 308 - -
Seca4g09266 419 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 70 417 IPR044300 GO:0010044|GO:0010447
Seca4g09266 419 FunFam Zinc finger protein 574 264 289 - -
Seca4g09266 419 ProSitePatterns Zinc finger C2H2 type domain signature. 267 287 IPR013087 -
Seca4g09266 419 Gene3D Classic Zinc Finger 359 409 - -
Seca4g09266 419 ProSiteProfiles Zinc finger C2H2 type domain profile. 265 292 IPR013087 -
Seca4g09266 419 SUPERFAMILY beta-beta-alpha zinc fingers 263 290 IPR036236 -
Seca4g09266 419 MobiDBLite consensus disorder prediction 219 250 - -
Seca4g09266 419 MobiDBLite consensus disorder prediction 219 240 - -
Seca4g09266 419 SMART c2h2final6 265 287 IPR013087 -
Seca4g09266 419 SMART c2h2final6 323 356 IPR013087 -
Seca4g09266 419 SMART c2h2final6 361 383 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09266 Seca-Chr4 219980129 219982286 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09266 72 416 C2H2 Transcription Factor Family AT5G22890 48.603 1.97e-106 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca4g09266 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09266 - - gmx:100802769 512.301