Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09265 ATGTTGTTATCTGAAATGGATCATATGGAAGGCATAGTGATGGAAGAACATGCTGTTCACGATGCCAACTGCATCATCAAAGGGAAGCGCACTAAGCGACGGTTGAGGCCTTTGTCTCCTTGCGCCGTAACCGCCGCGGCAACCGCCATGGCTTCCAGCTGCTCCAGCGCGTCCGGAAATGGCGGAGGCTTTGAAGGCGCTGATCAGGAAGAGGAAGACATGGCTAAGTGCTTGATTCTCTTAGCACAAGGAAAAGGAGGAAGAGATTCTCACAACCACCAACAACAACACAAACAGCAAGATGAAACTGAAACTGAAAATGAAAATCATGTGGATGGCAATAAGATTGTGCCAGAGAGGGCTAACAAAATTGGTTTATATATTTATGAGTGCAAAACCTGTAACAGAACATTTCCTTCTTTTCAAGCGTTAGGTGGACACAGAGCCAGTCACAAGAAGCCTAAGATGATGGTGATTACTTCTCAAGAGGAAAAAAAATCACCACCATCGCTACCACAAGCATCGCCACTAATCATGAAAAGTGAATTTGAAGAAGCAAAGCAAAGCCATATCAAGGTTATTAATCCTCCTGTTTCGCTTGAATTAGGGTGTGGTATTAATGGAGGTGGTTTGAGTTTGATCCATGGTGGTAACAAATCCAAGTCCAAGATTCACGAGTGTTCCATTTGCGGTTCAGAATTCACATCTGGCCAAGCGTTGGGTGGTCACATGAGGAGGCATAGAGCATCTACAATTAACATTAACAACACTGCTGATGTGAAGCCTCGGAATGTTCTAGAATTGGATCTCAATCTTCCGGCGCCGGAGGATGATCTCCGGGAGTCCAAGTTTCAGTTTCCGGCGAACCAGAAGTCTTTGTTGCTGTCTCCGGCTTTGGTGATGGGTTGCCATTATTAG 918 0.4542 MLLSEMDHMEGIVMEEHAVHDANCIIKGKRTKRRLRPLSPCAVTAAATAMASSCSSASGNGGGFEGADQEEEDMAKCLILLAQGKGGRDSHNHQQQHKQQDETETENENHVDGNKIVPERANKIGLYIYECKTCNRTFPSFQALGGHRASHKKPKMMVITSQEEKKSPPSLPQASPLIMKSEFEEAKQSHIKVINPPVSLELGCGINGGGLSLIHGGNKSKSKIHECSICGSEFTSGQALGGHMRRHRASTININNTADVKPRNVLELDLNLPAPEDDLRESKFQFPANQKSLLLSPALVMGCHY. 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09265 305 ProSitePatterns Zinc finger C2H2 type domain signature. 131 151 IPR013087 -
Seca4g09265 305 Gene3D Classic Zinc Finger 210 267 - -
Seca4g09265 305 SMART c2h2final6 225 247 IPR013087 -
Seca4g09265 305 SMART c2h2final6 129 151 IPR013087 -
Seca4g09265 305 SUPERFAMILY beta-beta-alpha zinc fingers 128 247 IPR036236 -
Seca4g09265 305 ProSitePatterns Zinc finger C2H2 type domain signature. 227 247 IPR013087 -
Seca4g09265 305 PANTHER ZINC FINGER PROTEIN ZAT5 62 289 - -
Seca4g09265 305 MobiDBLite consensus disorder prediction 90 112 - -
Seca4g09265 305 ProSiteProfiles Zinc finger C2H2 type domain profile. 129 156 IPR013087 -
Seca4g09265 305 Pfam C2H2-type zinc finger 225 249 - -
Seca4g09265 305 Pfam C2H2-type zinc finger 129 154 - -
Seca4g09265 305 ProSiteProfiles Zinc finger C2H2 type domain profile. 225 252 IPR013087 -
Seca4g09265 305 MobiDBLite consensus disorder prediction 85 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09265 Seca-Chr4 219961647 219962594 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09265 21 305 C2H2 Transcription Factor Family AT2G28200 39.763 5.08e-54 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca4g09265 zf-C2H2_6 2.1e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09265 - - gmx:100788646 301.982