Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09262 ATGGATATTCACCAAGACACATTTGGGTACATCAATGATTTTGAGCTGCACGACTTCATTGACGATCCCAACTTTGATCAGTTTATCAATTTGATTCGAGGGGAGAATGAGGATGCCATATGTAACTTTGGTTCTGACCTTATCAATGATTGCTTCGTTGATAATAATAACCAGCTCCTTTCATATCCTCAAAACCCATTTGAACAGAACAATAATAATGCTGTGAATGTCTATGATCCAAGCTCTACATTTAGCTCCTTCTCTTGTTTTGATGGGGAGGTCAAGGGAGATGGAGAAGGAGAAGAAGAAAATGATGGAGAGGATTCTTCAACAACAACCAAGGCAACTGATAGGTCCAAACAGAGGGTAAAAACCGATAGGTCCAAAACTCTCATTTGTGAGAGGAGGAGGAGAGGCCGAATGAAGGAGAAGCTTTATGCGTTGCGTTCTTTGGTTCCCAACATAACTAAGGTACGTCTCTCTGTTTCAATTAGATTAATTAAGATGGATAAGGCCTCTATAATTGGAGATGCAGTATCATACGTGCATGACCTTCAAGCACAAGCTAAGAAGCTGAAGGCTGAGGTTGCAGGACTTGAAGCATCCTTATTAGTGTCCGAAAATTATCAAGGATCAATTAACAACCTTATTAATGTTCAACCTACCCATAACAGCCGTCCAATCTGCAAGAAAATTATGCAGGTGGACATGTTTCAAGTGGAGGAAAGAGGGTACTATGCAAAGATAGTATGCAATAAAGGAGAAGGGGTAGCTGCCTCGCTCTACAGGGCTCTTGAGTCTCTTGCAGGTTTCAATGTTCAGAATTCAAATTTGGCAACAGTTTCTGACAATTTTATACTTACATTTACATTGAATGTAAAAGGTTCTGAACCAGAAATTAACCTTCCAAATTTGAAGCTATGGGTGACTGGCGCTCTTCTGAACCAAGGATTTGAATTCATGCCATCCTTTCATGCTTGA 981 0.4016 MDIHQDTFGYINDFELHDFIDDPNFDQFINLIRGENEDAICNFGSDLINDCFVDNNNQLLSYPQNPFEQNNNNAVNVYDPSSTFSSFSCFDGEVKGDGEGEEENDGEDSSTTTKATDRSKQRVKTDRSKTLICERRRRGRMKEKLYALRSLVPNITKVRLSVSIRLIKMDKASIIGDAVSYVHDLQAQAKKLKAEVAGLEASLLVSENYQGSINNLINVQPTHNSRPICKKIMQVDMFQVEERGYYAKIVCNKGEGVAASLYRALESLAGFNVQNSNLATVSDNFILTFTLNVKGSEPEINLPNLKLWVTGALLNQGFEFMPSFHA. 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09262 326 Gene3D - 115 202 IPR036638 GO:0046983
Seca4g09262 326 MobiDBLite consensus disorder prediction 95 127 - -
Seca4g09262 326 MobiDBLite consensus disorder prediction 107 127 - -
Seca4g09262 326 Coils Coil 182 202 - -
Seca4g09262 326 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 125 185 IPR011598 GO:0046983
Seca4g09262 326 Pfam Helix-loop-helix DNA-binding domain 132 186 IPR011598 GO:0046983
Seca4g09262 326 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 12 316 - -
Seca4g09262 326 SMART finulus 131 191 IPR011598 GO:0046983
Seca4g09262 326 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 127 201 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09262 Seca-Chr4 219916224 219918326 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09262 11 318 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 52.665 4.52e-100 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca4g09262 HLH 4.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09262 K26214 - gmx:100805451 469.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04190 4 75228879 75231125 Seca4g09262 4 219916224 219918326 PCT