Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09252 ATGGGAAGAGCTCCTTGCTGTGACAAAGCAAATGTGAAGAAAGGACCATGGTCACCAGAGGAAGACTCAAAGCTGAAAGAGTATATTGAGAAGCATGGAACTGGAGGGAATTGGATTGCTCTTCCTCAGAAAGCTGGTCTAAAGAGATGTGGAAAAAGTTGCAGATTGAGATGGCTTAACTATCTAAGGCCAAACATTAAGCATGGAAGATGGTCTATTATAGCTGCTCAGTTACCAGGCAGAACTGACAATGATATCAAGAACTACTGGAACACTAAACTAAAGAAGAAGCTCATGGGGTTGTTTCCTGAACCTAATCAAAGAAAACTACCTTATCAATCTTCTCCTCATGATCATCAAAACCCACCATTTCCTTCTCATCAATACAGAGACTATTACTACTGCAGCAACTCTTACTACAGCCCAGCAGCAACAACCATATCTCTCACAGGCTTTGAACCAATTTCTGTTTCTTCAAGTAGTTACACAAGCACATGCTGCACAACAACCTCAACTACCTCTCTCCCTTTTTACCATAACCAAGGAGAGTCCTTGGTTAGTAATACTGTTAGTCCTCCCATGCAATATTACCCTATCACAGAGACTAGTCTTCTCATGTTTGGAAGTGAAGGAAGTTGTAGTTCATCTGATGGAAGCTGTAGTCAGGTTAGCCATGGGAAGGAGATCAAACAAGAAGAAATAATGGGTTATCAGAATTGTTTCATGTTTGGTCACAACAGCAGCAGCATTAATAATAATCATAATAATGATTATGTTAATCAATGGGCAGAGGAAAAGGGAAATGGGTGCTTTTTTCAAAGGCAAAATCAATTGGATTATGATCTTGAGGTGATTAAGCAACTGATAAGTAGCAGTAATAGTAATAATGGGTACTTGAGTGTTGATGAAAACAAGACGGAGGAGAAGGGCATGTACTACCACTACTACTACTGA 954 0.3983 MGRAPCCDKANVKKGPWSPEEDSKLKEYIEKHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMGLFPEPNQRKLPYQSSPHDHQNPPFPSHQYRDYYYCSNSYYSPAATTISLTGFEPISVSSSSYTSTCCTTTSTTSLPFYHNQGESLVSNTVSPPMQYYPITETSLLMFGSEGSCSSSDGSCSQVSHGKEIKQEEIMGYQNCFMFGHNSSSINNNHNNDYVNQWAEEKGNGCFFQRQNQLDYDLEVIKQLISSSNSNNGYLSVDENKTEEKGMYYHYYY. 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09252 317 Gene3D - 7 67 - -
Seca4g09252 317 ProSiteProfiles Myb-like domain profile. 69 94 IPR001005 -
Seca4g09252 317 SUPERFAMILY Homeodomain-like 14 95 IPR009057 -
Seca4g09252 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Seca4g09252 317 CDD SANT 16 94 IPR001005 -
Seca4g09252 317 PANTHER OS09G0431300 PROTEIN 70 265 - -
Seca4g09252 317 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Seca4g09252 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 98 IPR017930 -
Seca4g09252 317 SMART sant 13 96 IPR001005 -
Seca4g09252 317 FunFam Transcription factor RAX3 7 68 - -
Seca4g09252 317 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Seca4g09252 317 Pfam Myb-like DNA-binding domain 67 92 IPR001005 -
Seca4g09252 317 Gene3D - 68 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09252 Seca-Chr4 219619537 219621455 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09252 1 118 MYB Transcription Factor Family AT5G57620 71.533 2.24e-63 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca4g09252 Myb_DNA-binding 9.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09252 K09422 - gmx:100796382 375.941