Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09251 ATGCAGAGATCTGGGTATTGCAAGGATGGAATATACAGGTCTCTCAGACCTTCTCTCGTGGTACCCAACGACCCTAATCTCTCCCTTGTCTCACACCTCTTCTCAAGAGTCTCTTCCTTTCCCACCAAACCCGCCCTTATCGATGCCGATTCATCCCAAACCTTCTCCTTCGCTCAGTTAAAGTCCCTCGTCCTTAAGCTCTCTCACGGCCTCCATCGCCTCGGGATCACCAAAAACGACGTCGTTCTATTCCTCGCACCAAACAGCATTCGTTACCCCATTTGCTTCCTCGCCGTCGTTTCCCTCGGTGCCGTTGTCTCCACCGTCAACCCATCCTACACCGTTACCGAAGTTTCCAAACAAGCCAAGGACTCCAACCCTAAACTCATCATCACCGTCGCTGAATTATGGGACAAGGTCAAGCACTTCAACCTCCCTGCAGTTTTCCTGGGTTCCACCGCCGTGCCGTCGGATTCGAAGGTCACGAGTTTCGACGCGTTGGTCGAACTCGGTGGGTCACCGACCGAGTTTCCGACGAGAAACGTGAAACAGAGTGATACGGCGGCGCTTTTGTACTCTTCCGGCACGACGGGTGTGAGCAAGGGTGTGGTTCTCACGCATGGGAATTTCATCTCTGCTTCTGTGATGATTGGAATGGACGATGAATTAGCGGGGCAAATGCACGACGTGTTCCTCTGCGTTTTGCCTATGTTTCATGTGTTTGGGCTTGCGGTTATTATCTACGCTCAGCTTCAGAGGGGAAACGCGGTGGTTTCTCTGAAGAGGTTTGAGTTTGAGGTGGTTTTGCAGACGATTGAGAAGTATAGGGTGACGCATTTGTGGGTGGTGCCTCCTATTATACTTGCTCTGGCTAAACATGCTTTGGTTGATAAGTATGATCTTTCTTCGTTGAAGCATATTGGTTCTGGTGCTGCCCCTCTTGGGAAAGAATTGATGGTGGAGTGTGCCAGACGTTTCCCTCATGCCACCGTTTGTCAGGGCTATGGTATGACTGAAACTTGTGGGATTGTTTCTGTGGAGAATTCAAGGATGGGGATTCGGCATACTGGTTCAACAGGAATGCTTGTTGCTGGAGTGGAGGCTCAAATAGTCAGTGTTGATACACTGAAGCCCCTCCCTCCTGGACAGCTGGGGGAGATATGGGTACGGGGTCCTAATATGATGCAAGTACAACTATTGCAAAAATTTTCAGGTTATCACAACAATCCACAGGCCACAAGATTAACTATCGATAAACAGGGGTGGGTACATACGGGAGATCTTGGATATATTGATGAGGATGGGCAACTTTTTGTTGTTGACCGTATTAAAGAACTGATCAAGTATAAAGGTTTTCAGGTTGCACCAGCAGAACTTGAAGGGCTTCTTGTTTCTCATCCTGAAATACTTGATGCTGTTGTCATCCCATATCCTGATGCTGAAGCTGGTGAGGTTCCAGTTGCCTATGTTGTTTGTTCACCCAATAGTTCACTAACTGAGGAAGATGTTCAAAAGTTTATTGCTAATCAGGTAGCACCTTTCAAAAGATTGCGGAGAGTGACATTCATCAACACTGTTCCTAAGACAGCATCAGGAAAAATTCTCCGAAGAGAGCTTATTGAAAAATCACGATCCAAACTATAA 1644 0.4769 MQRSGYCKDGIYRSLRPSLVVPNDPNLSLVSHLFSRVSSFPTKPALIDADSSQTFSFAQLKSLVLKLSHGLHRLGITKNDVVLFLAPNSIRYPICFLAVVSLGAVVSTVNPSYTVTEVSKQAKDSNPKLIITVAELWDKVKHFNLPAVFLGSTAVPSDSKVTSFDALVELGGSPTEFPTRNVKQSDTAALLYSSGTTGVSKGVVLTHGNFISASVMIGMDDELAGQMHDVFLCVLPMFHVFGLAVIIYAQLQRGNAVVSLKRFEFEVVLQTIEKYRVTHLWVVPPIILALAKHALVDKYDLSSLKHIGSGAAPLGKELMVECARRFPHATVCQGYGMTETCGIVSVENSRMGIRHTGSTGMLVAGVEAQIVSVDTLKPLPPGQLGEIWVRGPNMMQVQLLQKFSGYHNNPQATRLTIDKQGWVHTGDLGYIDEDGQLFVVDRIKELIKYKGFQVAPAELEGLLVSHPEILDAVVIPYPDAEAGEVPVAYVVCSPNSSLTEEDVQKFIANQVAPFKRLRRVTFINTVPKTASGKILRRELIEKSRSKL. 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09251 547 FunFam 4-coumarate--CoA ligase 2 445 546 - -
Seca4g09251 547 Pfam AMP-binding enzyme 36 449 IPR000873 -
Seca4g09251 547 ProSitePatterns Putative AMP-binding domain signature. 190 201 IPR020845 -
Seca4g09251 547 Gene3D - 445 546 IPR045851 -
Seca4g09251 547 FunFam Long-chain-fatty-acid--CoA ligase FadD 13 444 - -
Seca4g09251 547 SUPERFAMILY Acetyl-CoA synthetase-like 19 543 - -
Seca4g09251 547 Gene3D - 9 444 IPR042099 -
Seca4g09251 547 Pfam AMP-binding enzyme C-terminal domain 458 533 IPR025110 -
Seca4g09251 547 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 8 542 - -
Seca4g09251 547 CDD 4CL 21 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09251 Seca-Chr4 219585884 219590744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09251 1 547 Monolignol Biosynthesis Gene Families AT4G05160 67.935 0.0 787
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09251 K01904 - gmx:100797843 888.641