Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09247 ATGGTGTCTGACGCGAGCAAGAAGAAGGCTGCACAGAAGAAGGCGGCGGCGGCGGCCAAGAGAGGAGGCAAGGCTGCCGCAGCTGCAGCTTCATCAAAAACAGCGTCGGATAAGGCCGCCGACAAGCTCGCCGACGGAATTGGGGATATTCAGATTTCCGATCGGACCTGCACCGGCGTCCTCTGCTCACATCCTCTTTCCAGGGATATTCGGATAGAATCTCTGTCAGTTACGTTCCACGGACATGATCTGATAGTTGATTCTGAATTGGAGCTGAATTATGGCAGACGTTATGGTTTGCTTGGATTAAATGGTTGTGGAAAATCTACCCTGCTTACGGCAATAGGTTGCCGAGAGCTTCCTATTCCAGATCACATGGATATTCACCACCTTACCAGGGAAATTGAAGCCTCTGACATGTCTGCATTGGAGGCTGTCATAAGCTGTGATGAGGAAAGGTTGAAGCTGGAGAAAGAGGCTGAAGCTTTGGCTGCACAGGATGATGGGGGTGGTGAAGCTCTTGAACGTATTTATGAACGATTGGATGCCATGGATGCATCAACTGCAGAAAAGCGTGCTGCTGAAATTTTATTTGGTCTCGGTTTCGACAAGCAGATGCAGGCAAAGAAAACACGTGATTTTTCTGGTGGCTGGAGAATGAGGATTGCTTTAGCACGAGCTCTGTTTATGAACCCGACCATTCTTCTTCTTGATGAACCAACCAATCACCTTGATTTGGAAGCTTGTGTGTGGCTGGAGGAGAGTTTGAAAAAGTTTGATCGAATTCTGGTTGTGATTTCACACTCCCAGGATTTCCTTAATGGTGTCTGCACAAATATCATCCACATGCAAAACAAAAAATTGAAGATCTATACTGGAAATTACGATCAATATGTTCAGACACGTTCTGAACTGGAAGAGAACCAGATGAAGCAGTACAAATGGGAGCAGGAACAGATTGCTTCAATGAAGGAATACATTGCCCGGTTCGGTCATGGATCAGCAAAACTAGCTCGCCAAGCTCAGAGTAAAGAGAAAACTCTTGCAAAAATGGAGCGGGGTGGGCTTACAGAGAAGGTGGTAAAAGACAAAGTTTTGGTATTCCGCTTTGTTGATGTGGGAAAACTCCCCCCACCTGTCCTCCAGTTTGTTGAGGTGTCATTTGGTTACACTCCTGACAATCTCATCTACAAGAACATTGACTTTGGGGTTGATTTAGACTCTAGGATTGCTCTTGTTGGACCCAATGGAGCTGGGAAGAGTACGTTGCTAAAGCTAATGACAGGTGATTTGTTTCCTATCGATGGCATGGTTCGACGCCACAATCACCTTCGCATTGCACAATTTCATCAACACTTGGCTGAAAAGCTAGACATGGAATTGTCTGCTCTCCAGTTTATGATAAAAGAATACCCTGGAAATGAGGAAGAGAAGATGAGAGCAGCTATTGGGAAGTTTGGACTGTCAGGTAAAGCACAGGTGATGCCTATGAAGAACTTATCTGATGGGCAAAGGAGCCGAGTGATATTTGCATGGTTAGCTTACCGACAGCCTCACTTGCTACTTTTGGATGAGCCGACTAATCATTTGGATATTGAAACGATTGATTCATTGGCTGAAGCATTGAATGAATGGGATGGTGGCCTGGTGCTTGTTAGCCATGATTTTAGGCTCATAAATCAGGTGGCCCATGAGATATGGGTGTGTGCTGATCAAACTGTGACCAGATGGGAAGGGGACATTATGGAATTCAAGGAGCATCTAAGGGCAAAGGCAGGTTTATCTGACTGA 1791 0.4578 MVSDASKKKAAQKKAAAAAKRGGKAAAAAASSKTASDKAADKLADGIGDIQISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGCRELPIPDHMDIHHLTREIEASDMSALEAVISCDEERLKLEKEAEALAAQDDGGGEALERIYERLDAMDASTAEKRAAEILFGLGFDKQMQAKKTRDFSGGWRMRIALARALFMNPTILLLDEPTNHLDLEACVWLEESLKKFDRILVVISHSQDFLNGVCTNIIHMQNKKLKIYTGNYDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVKDKVLVFRFVDVGKLPPPVLQFVEVSFGYTPDNLIYKNIDFGVDLDSRIALVGPNGAGKSTLLKLMTGDLFPIDGMVRRHNHLRIAQFHQHLAEKLDMELSALQFMIKEYPGNEEEKMRAAIGKFGLSGKAQVMPMKNLSDGQRSRVIFAWLAYRQPHLLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCADQTVTRWEGDIMEFKEHLRAKAGLSD. 597
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09247 596 CDD ABCF_EF-3 381 573 - -
Seca4g09247 596 Gene3D - 348 594 IPR027417 -
Seca4g09247 596 FunFam ATP-binding cassette sub-family F member 3 341 595 - -
Seca4g09247 596 Gene3D - 70 334 IPR027417 -
Seca4g09247 596 Pfam ABC transporter 281 357 IPR032781 -
Seca4g09247 596 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 364 575 IPR027417 -
Seca4g09247 596 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 64 317 IPR027417 -
Seca4g09247 596 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 381 596 IPR003439 GO:0005524
Seca4g09247 596 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 70 310 IPR003439 GO:0005524
Seca4g09247 596 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 14 591 - -
Seca4g09247 596 ProSitePatterns ABC transporters family signature. 214 228 IPR017871 GO:0005524|GO:0016887
Seca4g09247 596 CDD ABCF_EF-3 70 287 - -
Seca4g09247 596 Coils Coil 288 308 - -
Seca4g09247 596 SMART AAA_5 406 594 IPR003593 GO:0016887
Seca4g09247 596 SMART AAA_5 94 296 IPR003593 GO:0016887
Seca4g09247 596 FunFam Abc transporter f family member 1 70 334 - -
Seca4g09247 596 Pfam ABC transporter 397 528 IPR003439 GO:0005524
Seca4g09247 596 Pfam ABC transporter 88 242 IPR003439 GO:0005524
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Seca4g09247 Seca-Chr4 219496315 219501269 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09247 201 268 Calmodulin-binding Proteins AT2G36910 44.286 7.83e-09 57.0
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09247 K06185 - gmx:100785099 1052.35
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g09247 4 219496315 219501269 Seca4g09247 4 219496315 219501269 ECH
Seca4g09247 4 219496315 219501269 Seca4g09247 4 219496315 219501269 PCT