Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca4g09247 | ATGGTGTCTGACGCGAGCAAGAAGAAGGCTGCACAGAAGAAGGCGGCGGCGGCGGCCAAGAGAGGAGGCAAGGCTGCCGCAGCTGCAGCTTCATCAAAAACAGCGTCGGATAAGGCCGCCGACAAGCTCGCCGACGGAATTGGGGATATTCAGATTTCCGATCGGACCTGCACCGGCGTCCTCTGCTCACATCCTCTTTCCAGGGATATTCGGATAGAATCTCTGTCAGTTACGTTCCACGGACATGATCTGATAGTTGATTCTGAATTGGAGCTGAATTATGGCAGACGTTATGGTTTGCTTGGATTAAATGGTTGTGGAAAATCTACCCTGCTTACGGCAATAGGTTGCCGAGAGCTTCCTATTCCAGATCACATGGATATTCACCACCTTACCAGGGAAATTGAAGCCTCTGACATGTCTGCATTGGAGGCTGTCATAAGCTGTGATGAGGAAAGGTTGAAGCTGGAGAAAGAGGCTGAAGCTTTGGCTGCACAGGATGATGGGGGTGGTGAAGCTCTTGAACGTATTTATGAACGATTGGATGCCATGGATGCATCAACTGCAGAAAAGCGTGCTGCTGAAATTTTATTTGGTCTCGGTTTCGACAAGCAGATGCAGGCAAAGAAAACACGTGATTTTTCTGGTGGCTGGAGAATGAGGATTGCTTTAGCACGAGCTCTGTTTATGAACCCGACCATTCTTCTTCTTGATGAACCAACCAATCACCTTGATTTGGAAGCTTGTGTGTGGCTGGAGGAGAGTTTGAAAAAGTTTGATCGAATTCTGGTTGTGATTTCACACTCCCAGGATTTCCTTAATGGTGTCTGCACAAATATCATCCACATGCAAAACAAAAAATTGAAGATCTATACTGGAAATTACGATCAATATGTTCAGACACGTTCTGAACTGGAAGAGAACCAGATGAAGCAGTACAAATGGGAGCAGGAACAGATTGCTTCAATGAAGGAATACATTGCCCGGTTCGGTCATGGATCAGCAAAACTAGCTCGCCAAGCTCAGAGTAAAGAGAAAACTCTTGCAAAAATGGAGCGGGGTGGGCTTACAGAGAAGGTGGTAAAAGACAAAGTTTTGGTATTCCGCTTTGTTGATGTGGGAAAACTCCCCCCACCTGTCCTCCAGTTTGTTGAGGTGTCATTTGGTTACACTCCTGACAATCTCATCTACAAGAACATTGACTTTGGGGTTGATTTAGACTCTAGGATTGCTCTTGTTGGACCCAATGGAGCTGGGAAGAGTACGTTGCTAAAGCTAATGACAGGTGATTTGTTTCCTATCGATGGCATGGTTCGACGCCACAATCACCTTCGCATTGCACAATTTCATCAACACTTGGCTGAAAAGCTAGACATGGAATTGTCTGCTCTCCAGTTTATGATAAAAGAATACCCTGGAAATGAGGAAGAGAAGATGAGAGCAGCTATTGGGAAGTTTGGACTGTCAGGTAAAGCACAGGTGATGCCTATGAAGAACTTATCTGATGGGCAAAGGAGCCGAGTGATATTTGCATGGTTAGCTTACCGACAGCCTCACTTGCTACTTTTGGATGAGCCGACTAATCATTTGGATATTGAAACGATTGATTCATTGGCTGAAGCATTGAATGAATGGGATGGTGGCCTGGTGCTTGTTAGCCATGATTTTAGGCTCATAAATCAGGTGGCCCATGAGATATGGGTGTGTGCTGATCAAACTGTGACCAGATGGGAAGGGGACATTATGGAATTCAAGGAGCATCTAAGGGCAAAGGCAGGTTTATCTGACTGA | 1791 | 0.4578 | MVSDASKKKAAQKKAAAAAKRGGKAAAAAASSKTASDKAADKLADGIGDIQISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGCRELPIPDHMDIHHLTREIEASDMSALEAVISCDEERLKLEKEAEALAAQDDGGGEALERIYERLDAMDASTAEKRAAEILFGLGFDKQMQAKKTRDFSGGWRMRIALARALFMNPTILLLDEPTNHLDLEACVWLEESLKKFDRILVVISHSQDFLNGVCTNIIHMQNKKLKIYTGNYDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVKDKVLVFRFVDVGKLPPPVLQFVEVSFGYTPDNLIYKNIDFGVDLDSRIALVGPNGAGKSTLLKLMTGDLFPIDGMVRRHNHLRIAQFHQHLAEKLDMELSALQFMIKEYPGNEEEKMRAAIGKFGLSGKAQVMPMKNLSDGQRSRVIFAWLAYRQPHLLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCADQTVTRWEGDIMEFKEHLRAKAGLSD. | 597 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca4g09247 | 596 | CDD | ABCF_EF-3 | 381 | 573 | - | - | |
Seca4g09247 | 596 | Gene3D | - | 348 | 594 | IPR027417 | - | |
Seca4g09247 | 596 | FunFam | ATP-binding cassette sub-family F member 3 | 341 | 595 | - | - | |
Seca4g09247 | 596 | Gene3D | - | 70 | 334 | IPR027417 | - | |
Seca4g09247 | 596 | Pfam | ABC transporter | 281 | 357 | IPR032781 | - | |
Seca4g09247 | 596 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 364 | 575 | IPR027417 | - | |
Seca4g09247 | 596 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 64 | 317 | IPR027417 | - | |
Seca4g09247 | 596 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 381 | 596 | IPR003439 | GO:0005524 | |
Seca4g09247 | 596 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 70 | 310 | IPR003439 | GO:0005524 | |
Seca4g09247 | 596 | PANTHER | ATP-BINDING TRANSPORT PROTEIN-RELATED | 14 | 591 | - | - | |
Seca4g09247 | 596 | ProSitePatterns | ABC transporters family signature. | 214 | 228 | IPR017871 | GO:0005524|GO:0016887 | |
Seca4g09247 | 596 | CDD | ABCF_EF-3 | 70 | 287 | - | - | |
Seca4g09247 | 596 | Coils | Coil | 288 | 308 | - | - | |
Seca4g09247 | 596 | SMART | AAA_5 | 406 | 594 | IPR003593 | GO:0016887 | |
Seca4g09247 | 596 | SMART | AAA_5 | 94 | 296 | IPR003593 | GO:0016887 | |
Seca4g09247 | 596 | FunFam | Abc transporter f family member 1 | 70 | 334 | - | - | |
Seca4g09247 | 596 | Pfam | ABC transporter | 397 | 528 | IPR003439 | GO:0005524 | |
Seca4g09247 | 596 | Pfam | ABC transporter | 88 | 242 | IPR003439 | GO:0005524 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca4g09247 | Seca-Chr4 | 219496315 | 219501269 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca4g09247 | 201 | 268 | Calmodulin-binding Proteins | AT2G36910 | 44.286 | 7.83e-09 | 57.0 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca4g09247 | K06185 | - | gmx:100785099 | 1052.35 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Seca4g09247 | 4 | 219496315 | 219501269 | Seca4g09247 | 4 | 219496315 | 219501269 | ECH | |
Seca4g09247 | 4 | 219496315 | 219501269 | Seca4g09247 | 4 | 219496315 | 219501269 | PCT |