Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09246 ATGGCCAAGCTCAGTGGTGTCAGAAACAGCAGCAAGAAGGGTGGGAGTGGCATTGTGAAGTTCAAGTTTGTGGTTGAGAAGCTTCACAAGAGGCTCTTACTTGGGAGAAATAAAGGAAGCAGTGACTTTGACAGATACGAACAAGTGCCAGAAGATGTGAAGGAAGGACACTTCGCTGTGATTGCTGAAGGTGGAGAGGAACCAAAGAGATTCGTTCTTCCACTAAGCTGTTTAACAAACCCAATGTTTTTGAGGCTTTTGGAGAGAGCAGCAGAAGAGTATGGGTTTGATCATGAAGGTGCACTAACCATTCCATGCAGGCCTTCTGAACTTGAGAGGATATTGGCACAGCAATGGCAGCAGCAACAAGAGGATCATCAAACTACTGCGTGTAATAAATCATCGTTTTTCCATAACTACTGA 423 0.4468 MAKLSGVRNSSKKGGSGIVKFKFVVEKLHKRLLLGRNKGSSDFDRYEQVPEDVKEGHFAVIAEGGEEPKRFVLPLSCLTNPMFLRLLERAAEEYGFDHEGALTIPCRPSELERILAQQWQQQQEDHQTTACNKSSFFHNY. 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09246 140 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 36 114 IPR003676 GO:0009733
Seca4g09246 140 Pfam Auxin responsive protein 37 116 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09246 Seca-Chr4 219472122 219472544 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09246 7 106 Calmodulin-binding Proteins AT3G43120 39.806 2.09e-16 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09246 K14488 - gmx:100794278 172.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g09246 4 219472122 219472544 Seca4g09246 4 219472122 219472544 ECH
Seca4g04155 4 74517676 74518101 Seca4g09246 4 219472122 219472544 PCT