Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09230 ATGGACAAGAGATCATTTTTGGTTAAAAATCCCAAGGCTGAGACAAAAACTGGATGCGAAGCAAGAATTGGACTTTGCAAAAAGAATGGGAAGCTTGTAATCCATGAGTTCGTGGAGGCCCATAACCACCCTTTACAGCTTGCAGAAACAACACATATGCTAGCATCACTCCTTAAAATAACTAAGGTTCAAGCATATGAAATTGAAATGGTAGAGGACTCTGGATTGGCGCAAAAGGCTTCATTTCAGCTTATAAGTGCACATGCAGGAAATAGAGCAAATCTTGGATATACACGGTTAGATGCCAAAAACTATCTCAAAGCAAGAAGACAACATAGTATGTTATATGGGGAAGCCGATAGTCTTATGCAGTATTTTCAACGCCAACAATTAGAGAATCCATCATTTTACCATGCATATCAAATGGACTGTGATGAACAAATCACAAATGTATTTTGGGTTGATGTAAAAATGATTTTAGATTATGGATATTTTGGTGATGTGATCTCTTTGGATACAACTTATTGTACTAATCGTGCTAATAGACCATTGGCATTGTTTTCAGGCTTCAACCATTATAGGGGAACAGTCATTTTTGGGGCTGCACTGTTGTATGATGAAATGACCGAATCGTTTAAATGGCTATTTGAAACATTTCTTGAATCACATGGGAATAAAAAGCCTCAAACTTTGTTTACTGACCAAGACAAAGCAATGGCTACAACACTAGCTGAGGTGATGCCAGAGACTCGACATGGCTTATGCACATGGTACTTGATACAAAATGGGATCAAACACCTTGGTAACTTAATGAAAAAAGAAAGTCATTTCTTGACTAACTTTAAAAAGTGCATGTATGATTATGACCAAGATGTGAAATTTGAGGTAGCTTGGAGCAAGTTGCTAGCTGAATATAATGTTAGCGAAAACAATTGGGTGAAATCAGTGTATGCTATCAAAGAAAAATGGGCAGCATATCACATGGAGGAAGCACTCACCTTGGGAATGCGAAGCACTCAACTTAGTGAGAGTTTGAACTCAAATTTTAAGGCTTGTATGAGACCTGATGTGAATGTCGTCCAATTCTTTAAGGACTTTGAGGGAGTTGTTGAGGAGAAACGATATAAACAGTTAGTCTGTGAATATGAGTCTCGACATAAACTACCAATGTTGAGATATAATCATTCACCAATTCTAGTGCAACTTGCACGAGTATACACACATACAATCTTTGACATATTCCATGATGAGTTTGCCTTATCTTTAGCTGATTGCATACAAGAGAGAAATGTATCTCAACTTCCATTTGAATATGTGATCACCTTGGTCAATGAGGAAGGAACATGGAGAGTGCTATTTGATCCTGTGCAGTGCTTCATATCTTGCAACTGTAGAAAATTTGAGATTTTCGGAATACTTTGTAGCCATGCATTAAAGGTTTTTGAGGAAAATTATGTTAAACCTGTCCCCGATCAATACATCCTAAAAAGATGGACAAGAGATGCACACAATGGTATTATACACGATGTAAGGAGAAATGAGGTTGTGGCAAATCCCAAACCATGTAGCACACAACAGTATAGGCAACTTTGCTGCACTATGATTAGGTTGGCAGCTTTGGTATTGGATTCTGAAAAATTAAACCAACTTGTGGAGAAAGGGGTGCATGATTTGTGGAAGCAGGTGGTGGAGATTCGGTTACAAGACAAAGCAAATGAATATGGTGAAGATAATGTCCCAACACTAACACAAGCAAAGGGGTTCAAGCACAGAGCTGGGTTAAAAAGGCATAAACGGTTAAAGAGTTAG 1809 0.3803 MDKRSFLVKNPKAETKTGCEARIGLCKKNGKLVIHEFVEAHNHPLQLAETTHMLASLLKITKVQAYEIEMVEDSGLAQKASFQLISAHAGNRANLGYTRLDAKNYLKARRQHSMLYGEADSLMQYFQRQQLENPSFYHAYQMDCDEQITNVFWVDVKMILDYGYFGDVISLDTTYCTNRANRPLALFSGFNHYRGTVIFGAALLYDEMTESFKWLFETFLESHGNKKPQTLFTDQDKAMATTLAEVMPETRHGLCTWYLIQNGIKHLGNLMKKESHFLTNFKKCMYDYDQDVKFEVAWSKLLAEYNVSENNWVKSVYAIKEKWAAYHMEEALTLGMRSTQLSESLNSNFKACMRPDVNVVQFFKDFEGVVEEKRYKQLVCEYESRHKLPMLRYNHSPILVQLARVYTHTIFDIFHDEFALSLADCIQERNVSQLPFEYVITLVNEEGTWRVLFDPVQCFISCNCRKFEIFGILCSHALKVFEENYVKPVPDQYILKRWTRDAHNGIIHDVRRNEVVANPKPCSTQQYRQLCCTMIRLAALVLDSEKLNQLVEKGVHDLWKQVVEIRLQDKANEYGEDNVPTLTQAKGFKHRAGLKRHKRLKS. 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09230 602 Pfam SWIM zinc finger 450 483 IPR007527 GO:0008270
Seca4g09230 602 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 9 562 IPR031052 GO:0006355
Seca4g09230 602 Pfam MULE transposase domain 168 262 IPR018289 -
Seca4g09230 602 ProSiteProfiles Zinc finger SWIM-type profile. 438 485 IPR007527 GO:0008270
Seca4g09230 602 SMART 26again6 460 487 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09230 Seca-Chr4 218967198 218969006 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca4g09230 MULE 8.2e-24 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09230 - - mtr:112420213 737.643