Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09229 ATGAGTAACTCAAGGCCTGAGTCTCATGTAGCACAGCAAATTCGGCGAGATAAATTGAGAATCCAAAATTCACAGGAATTTCCTAATAATATAGAGCAATTGTCATTACACCCAGGGTTTAACATGGATCTTGTTCAAGTTAGGAATGTTAGAAATGCTAACATGCTTGATGAACAAGCTGTTTATTCTTCAGAAGTGCCAAACTTCTCAACCGCTTCAAATCCTTTGTCTGCTCCAAGGAACGCCTTGGAGTATCAGGATGAACCGAGCAGGCTAATGATGCATCAGTATGGTTCATTTCCTCATTCCTCATTGGTTGGTCTTCATTCTCCCCAAAAAGAACATTTGGAAAATTGGAGAAACAGTGCTCCCCATCAAGGCTGTGATTGGGTTGTAAATTATGCAAACAGTTCTCTGGCAAACGGAAGCACCAACAGCAACACTTTCTTGGCTGCTGAGCCCAACAATAATGTTGATGCTTACCAGCAACAGATGCATCCTCCATCTCCAATTTATCAGAATACATTGCAGGAAATTGTCAAATCAGCTTCAGGAATTTGGGGAGGGAGTAATAATGGTAGTGAACTTGAACCTCAATATGGAAACCAGCCTAATCCGTTGCGTTTTGGTTGGACAAATAGACAAATTGACAATAATACCCTTAACCCGCTGGGTTTCTCAGACAAAAAGGTTTATGAACACACTGGGCCTTTCATTTCTGATTCTAATCCACAGAGCTTATCCTTATCACTTTCATCTAATGCACAATCCAAGGCTCCTGTTTTTGCATCAGATGATTCTCAACATCTGAAGCATGTGAAATCTATCATTTCTAGAGAGAGTGGGAAATCAGTTCAAGATCACACCGTGTTAAAGACTAGTTATCGGAATGTGGGCCCACTCGGCCCATTTACTGGGTATGCTACTATTCTGAAGAGTTCAAGGTTCTTGAAGACAGCCCAACAGTTGTTAGATGAGTTTTGTTGTTCGAAATTTGCGAAAACATGTGATGTTTCAGAGAGGGTCTCTCTCTCTAGAGAAGTTAGTGCTTCTACTTCAGCTGATACTGTCACTGTCAATGAAACTACTGGTGTTGCTTCCAAAGGTAGTAATTCAGGTTCTTCATCAATATCCTCTATGTTGTATATGTCAAAAGAAAACAGTGCTGATTGGGAGAAACGAAGTAGCTTTGGTGTTTCTTCACGGCCGGATTATCAACAGAAGAAAGCAAAGCTCCTGTACATGCAAGAGGAGGTCAACAGGAGATACAAGCAGTACCATCAACAAATGCAAATGGTTGTTGCATCCTTTGAATCAGTAGCGGGTCTTAGTTCAGCTACTCCTTACATCTCATTGGCTTTCAAGTCAGTGTCAAAACAATTCAGGTGCCTAAACAATTCTATCTCAGATCAGCTCAAGGTTATAAGCGTGTTGGTGGAGGATTTTTCAATACCTACCACCAGTACTAGTAGTAAAGTTGACACTAATATGGCAAGGCTAAGGTGCATGGACCAAAGCTTTCAAAAGAACAAATCTGGCAGGGGTAGCACTGGCCTTATTGAAGCCCAACATGTGTGGAGGCCACAGAGAGGCTTACCAGAACGCTCAGTGGCAATTCTTAGAGCTTGGTTATTTGAACATTTTCTTCATCCTTACCCCACAGACATTGATAAACAAATGTTGGCTACTCAAACAGGTCTTTCTCGAAACCAGGTATCGAATTGGTTCATTAATGCTCGAGTCCGTGTGTGGAAGCCAATGGTTGAGGAAATACACATGCTTGAAACAAAAGCATCAGGTGGCAATGAGAATGAGGGAACTTCTGGCACTGAAGGTGGTACTAGCCAGCCTAGAGTGGACAAGTCTCTGAGCAAGTTTGGTATGCACACCATACCTGAAAACCAATTTCAGGGTATGGAAATGGATTCATCCATAGCTGCTGCCAATGCCGAAGAAAGAGGGATGTTCAATGCAGAGCAATGGAGTCAAGAGAAGCGATCTAAATTGGAATGTCAAATGAGTTCAAACATGGATGGGACACTGATGAGTTTTTTGCCATGCAGACATGGTGGACTTGAGGTTGGGGGACTTGGGTCTGTGTCACTGACATTGGGTCTGAGGCATGGTGTTGAAGGTGTACAGCACCAACAACAACAACTACAAGAGGAGCAGCTTAGGTGTCACCTTGGAGGGCAAATGATCCATGACTTTGTAGGCTGA 2220 0.4257 MSNSRPESHVAQQIRRDKLRIQNSQEFPNNIEQLSLHPGFNMDLVQVRNVRNANMLDEQAVYSSEVPNFSTASNPLSAPRNALEYQDEPSRLMMHQYGSFPHSSLVGLHSPQKEHLENWRNSAPHQGCDWVVNYANSSLANGSTNSNTFLAAEPNNNVDAYQQQMHPPSPIYQNTLQEIVKSASGIWGGSNNGSELEPQYGNQPNPLRFGWTNRQIDNNTLNPLGFSDKKVYEHTGPFISDSNPQSLSLSLSSNAQSKAPVFASDDSQHLKHVKSIISRESGKSVQDHTVLKTSYRNVGPLGPFTGYATILKSSRFLKTAQQLLDEFCCSKFAKTCDVSERVSLSREVSASTSADTVTVNETTGVASKGSNSGSSSISSMLYMSKENSADWEKRSSFGVSSRPDYQQKKAKLLYMQEEVNRRYKQYHQQMQMVVASFESVAGLSSATPYISLAFKSVSKQFRCLNNSISDQLKVISVLVEDFSIPTTSTSSKVDTNMARLRCMDQSFQKNKSGRGSTGLIEAQHVWRPQRGLPERSVAILRAWLFEHFLHPYPTDIDKQMLATQTGLSRNQVSNWFINARVRVWKPMVEEIHMLETKASGGNENEGTSGTEGGTSQPRVDKSLSKFGMHTIPENQFQGMEMDSSIAAANAEERGMFNAEQWSQEKRSKLECQMSSNMDGTLMSFLPCRHGGLEVGGLGSVSLTLGLRHGVEGVQHQQQQLQEEQLRCHLGGQMIHDFVG. 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09229 739 Pfam Homeobox KN domain 543 582 IPR008422 GO:0003677|GO:0006355
Seca4g09229 739 ProSiteProfiles 'Homeobox' domain profile. 523 586 IPR001356 GO:0003677
Seca4g09229 739 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 171 605 - -
Seca4g09229 739 FunFam BEL1-like homeodomain protein 9 529 591 - -
Seca4g09229 739 SMART prehox3 305 470 IPR006563 -
Seca4g09229 739 MobiDBLite consensus disorder prediction 600 620 - -
Seca4g09229 739 Gene3D - 529 591 - -
Seca4g09229 739 CDD homeodomain 526 587 IPR001356 GO:0003677
Seca4g09229 739 SMART HOX_1 526 590 IPR001356 GO:0003677
Seca4g09229 739 Pfam Associated with HOX 310 469 IPR006563 -
Seca4g09229 739 SUPERFAMILY Homeodomain-like 528 593 IPR009057 -
Seca4g09229 739 MobiDBLite consensus disorder prediction 595 620 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09229 Seca-Chr4 218954039 218961348 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09229 290 708 Homeobox Transcription Factor Family AT4G34610 36.117 9.70e-64 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Seca4g09229 POX 1.2e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09229 - - gmx:100790583 795.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04134 4 73873912 73882585 Seca4g09229 4 218954039 218961348 PCT