Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09222 ATGATGTTACCACATGAGGGAGAGAAGGGGAAGAGCAGCGAGTTGGACCCCTTGAAGTGGGAGGCGGCTGCGGAGTCGTTGAAGGGGAGTCATTTGGAGGAAGTGAAGAGGATGGTGGAGGATTATAGGAAGGAGGCGGTGAGGGTGGGAGGCGAGACGTTGACGGTGGGGGAGGTGGTGGCGGTGGCAGAGAGGCGGGTGGCGGTGGAACTGAACGAGGCGGCGAGGGTGAGAGTGAAGGCAAGCAGTGAGTGGGTGATGGAAAGCATGCACAATGGGACTGATTGTTATGGGGTCACTACTGGCTTTGGTTCCACCTCACATAGAAGAACCACACAGGGTTTGGCCCTCCAAACTGAACTCATTAGGTTTTTGAATGCTGGAATTTTTGGGAATGAGGCAGAAGCATGCCATACTTTGCCACGCACTGCAACAAGAGCTGCAATGCTGGTAAGAGTGAATACCCTCCTTCAAGGCTACTCTGGCATTAGATATGAGATACTAGAAGCCATTGCAAAATTGCTCAATCACAGCATCACACCATGCTTGCCATTGCGTGGTTCAATTTCAGCCTCAGGGGACTTGGTTCCATTTTCATACATATCTGGACTCCTGACTGGGAGGCCAAATTCAAAGGCCATTGGACCCAATGGTGACTCCCTAAGTGCTGCAGAAGCTTTCCATGTAGCTGGTATTAGTGGGGGCTGCTTTAAGTTGCAACCCAAGGAGGGTCTTGCACTTGTTAATGGAACTGGGGTTGGAGCTGGTTTAGCTTCTATAGTTCTATTTGAGGCTAACATCTTAACCATCTTATCTGAAGTCATGTCTGCCATTTTTGCTGAAGTCATGCAAGGAAAGCCAGAGTTTACAGACCATTTGACTCACAAATTGAAGCACCATCCTGGTCAGATTGAGGCTGCAGCAGTTATGGAACATATCTTGCATGGAAGTGCTTATGTTAAAGCAGCACAAAAGTTACATGAGATAGATCCTTTCCGAAAGCCTAAGCAAGATAGATATGCTCTTAGGACTTCACCTCAATGGTTAGGTCCTCAAATTGAAGTTATTCGGTTATCAACAAAATCAATTGAAAGGGAGATCAATTCTGTGAATGATAACCCTTTGATTGATGTATCAAGGAACAAAGCTTTACATGGTGGCAATTTTCAGGGCACCCCAATAGGGGTTTCTATGGACAACACGAGATTAGCTTTGGCTGCCATTGGAAAACTCCTTTTTGCTCAAATGTCTGAGTTGGTTAATGATTTCTACAATAATGGTTTGCCTTCAAATCTCTCAGGAGGTCATTGTCCAAGCTTGGACTATGGATTTAAGGGTGGTGAGATAGCAATGGCTGCATACTGTTCTGAGCTTCAGTATCTAGCAAACCCTGTTACTAATCACGTGCAAAGTGCAGAACAACACAATCAAGATGTGAATTCTCTGGGTCTAATCTCTGCAAGGAAAACAGCTGAAGCTGTTGAAATATTAAAGCTCATGTCTTCAACTTACCTGATTGCTCTTTGTCAAGCAATAGATTTGAGGCATTTGGAGGAGAATCTAAAGAACACAGTTAAGAATACGGTGAGCCAAGTAGCTAGAAAAGTCCTGACTGTGGGTGTCAATGGGGAGGTTCATCCTTCCAAGTCCTGTGAGAAAGATTTGCTCAAAGTGGTTGATTGTGAGTATGTATTTGCTTACATTGATGACCCTTGCAATGCTACATACCCACTTATGCAAAAACTTAGGCAAGTGCTCGTGGAACATGCATTGAGGACTAATAATGGTTTGAAAAGTATAAATGCTTCCATCATTCTGAAGATTGGTGCCTTCGAGGAGGAATTGAAGAGAGTCTTACCCAAAGATGTTCAATCTACAAGGAATGCCTTTGAAAAGGGGAGGTCAGTGAGTCCTAACAAAATAAAGGAATGCAGGTCCTACCCGCTGTACAAGTTTGTCAGAGAAGAATTGGGGACAGAGTTCTTAACGGGAGAGAAAATGAAATCCCCTGGAGAAGATTTTGATGAAGTTTTTAATGCAATTACTCAGGGAAAAATAATAGATCCAATGTTTGCATGCCTCAAGGATTGGGATGGTACTCCTCTTCCTATATGTTGGAGCTCCTCATAG 2130 0.4451 MMLPHEGEKGKSSELDPLKWEAAAESLKGSHLEEVKRMVEDYRKEAVRVGGETLTVGEVVAVAERRVAVELNEAARVRVKASSEWVMESMHNGTDCYGVTTGFGSTSHRRTTQGLALQTELIRFLNAGIFGNEAEACHTLPRTATRAAMLVRVNTLLQGYSGIRYEILEAIAKLLNHSITPCLPLRGSISASGDLVPFSYISGLLTGRPNSKAIGPNGDSLSAAEAFHVAGISGGCFKLQPKEGLALVNGTGVGAGLASIVLFEANILTILSEVMSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAVMEHILHGSAYVKAAQKLHEIDPFRKPKQDRYALRTSPQWLGPQIEVIRLSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALAAIGKLLFAQMSELVNDFYNNGLPSNLSGGHCPSLDYGFKGGEIAMAAYCSELQYLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVEILKLMSSTYLIALCQAIDLRHLEENLKNTVKNTVSQVARKVLTVGVNGEVHPSKSCEKDLLKVVDCEYVFAYIDDPCNATYPLMQKLRQVLVEHALRTNNGLKSINASIILKIGAFEEELKRVLPKDVQSTRNAFEKGRSVSPNKIKECRSYPLYKFVREELGTEFLTGEKMKSPGEDFDEVFNAITQGKIIDPMFACLKDWDGTPLPICWSSS. 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09222 709 FunFam Phenylalanine ammonia-lyase 8 251 - -
Seca4g09222 709 CDD PAL-HAL 52 515 IPR001106 -
Seca4g09222 709 Gene3D - 518 639 IPR023144 -
Seca4g09222 709 NCBIfam phenylalanine ammonia-lyase 16 695 IPR005922 GO:0005737|GO:0006559|GO:0016841
Seca4g09222 709 FunFam Phenylalanine ammonia-lyase 252 572 - -
Seca4g09222 709 FunFam Phenylalanine ammonia-lyase 518 639 - -
Seca4g09222 709 PANTHER HISTIDINE AMMONIA-LYASE 16 705 IPR001106 -
Seca4g09222 709 Gene3D - 8 251 IPR024083 -
Seca4g09222 709 Pfam Aromatic amino acid lyase 54 527 IPR001106 -
Seca4g09222 709 SUPERFAMILY L-aspartase-like 16 705 IPR008948 GO:0003824
Seca4g09222 709 Gene3D Fumarase/aspartase (Central domain) 253 699 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09222 Seca-Chr4 218864815 218867798 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09222 2 705 Monolignol Biosynthesis Gene Families AT3G53260 74.543 0.0 1123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09222 K10775 - vvi:100241575 1116.29