Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09220 ATGAAGGCTCAACTCAAAGTTGTTGTTACTCTTGTTATTAGCTTGCTTTGGATTCAGCAATCATTTTGTGATGAACCTTCTGATACTGGCCTAAACAAGTGGAGATGTAGATGTTCTTCTTTCCAAGGGAACCAGAGATACTCTCTTGCTAATTGTTCTAAGTCATGTGATTGCCATTCAGATGCTGAAGAGAGTTCATCCATATGGACATGCATATGTGATCCGAATGGGTTTCCTGAAGTGACAGCAGATGGCCATAATCCTAATTGCTTTAATGCCTGCAACTGCACCTGGGGAACTGTTAGGATGCCACTGGGTTCAAAGAAACACATTTTGAGCAAGATTGTAGTAGTTATTCTAATAGTATGTGTCATATGCACAACTATTGCATTTTTTGCCTCAGTTACATGTTATGTCTGCCGAAGGGAGAGATGTCCTATTCAATCACCAATGATCTCATCAGATAAGGAAATGAGTTACAGTAGTAGCACCAACTTATTTAGTCATAGGACTTCTTCAGTGCAAGTCACTATAAATTCTCCTATTAGTCATATTGCAAGATGCTTTCAGAAGGCCTCTTTATTATTTGGGAGCCAAAAAGAAACTTTTCATGGAAGTATTATTCAATTTTCATTTGCTGAATTGGAAAATGCCACTGAAAACTTTTCAGCTTCCAACCTAATTGGACTAGGTGGAAGTAGTTATGTATACCGTGGTTGGCTAAAAGATGGTAGTAATGTGGCAGTCAAGAGACTAAAAGATCAAAGAGGGCCTGAAGCAGACTCTGAATTTTTTACAGAGGTTGTACCTAATCTTACAATAATTGAACTATTATCTAGGCTTCACCATTGTCATCTGGTGCCACTGATTGGATATTGCTCAGAATTAAAAGGAAAAAATGTTCAGAGGTTACTAGTGTTTGACTACATGAGTAATGGCAATTTGAGGGACCGTTTAGATGGAATTTTTGGAAAAAACATGGATTGGGCTACTCGTGTTACAATTGCATTAGGAGCTGCAAGGGGTTTGGAGTATCTTCATGAGGCAGCTGCTCCTAGAATTCTGCACAGAGATGTCAAATCAACAAATATTCTTCTGGATAAAAATTGGCAAGCAAAAATAACTGATCTTGGTATGGCTAAAAACTTGATAGCTGATGACCTCCCCAGTTGTTCAGATTCTCCAGCAAGAATGAAGGGGACATTTGGCTATTTTGCACCTGAGTATGCAATTATAGGGAGAGCCTCTCTTGAGTCTGATGTCTTCAGTTTTGGGGTGGTTCTTCTTGAGCTTATCAGTGGCCGGCAACCCATCCATAAATCTGCTGGCAAAGAAGAGAGCCTTGTTATATGGGCTACTCCTCGCTTAGAGGATAGTAGGCGAGTAATAACAGAATTGGCTGATCCACAATTGAAAGGAAAATTCCCAGAAGAAGAGGTGCAGATAATGGCATACTTAGCAAAGGAATGTTTGCTTTTAGATCCTGACACTAGACCAACTATGAGTGAAGTTGTTCATATTCTTTCAAGTATTTCACCAGGAAGATCTAGAAGGAGAAGAAGCATTCCAGTGGGGCTTTTTCAGGAAGCAGAGGACGTGGACAAGCAAAAACAAGCTCCATTGAGTAGATTTCCAGCTTGTAATTTATTGCCACTAGGTATTGAGAACAATGTTAGTGTTGGAAATGAAAATAAAGATGTAGATAAAGTTTCAACTGAGTATAGGGAGAGTTTGATCCTCTTGACTTCAAAAGGTGAGAAGAACTGGCATGCATCAGAAGAGGAAATGGTAGACCTAACAGAACCTCGGTTTGAATCATTTTGCATGGCAAACGTCAACAATTTCCCTTGA 1851 0.3949 MKAQLKVVVTLVISLLWIQQSFCDEPSDTGLNKWRCRCSSFQGNQRYSLANCSKSCDCHSDAEESSSIWTCICDPNGFPEVTADGHNPNCFNACNCTWGTVRMPLGSKKHILSKIVVVILIVCVICTTIAFFASVTCYVCRRERCPIQSPMISSDKEMSYSSSTNLFSHRTSSVQVTINSPISHIARCFQKASLLFGSQKETFHGSIIQFSFAELENATENFSASNLIGLGGSSYVYRGWLKDGSNVAVKRLKDQRGPEADSEFFTEVVPNLTIIELLSRLHHCHLVPLIGYCSELKGKNVQRLLVFDYMSNGNLRDRLDGIFGKNMDWATRVTIALGAARGLEYLHEAAAPRILHRDVKSTNILLDKNWQAKITDLGMAKNLIADDLPSCSDSPARMKGTFGYFAPEYAIIGRASLESDVFSFGVVLLELISGRQPIHKSAGKEESLVIWATPRLEDSRRVITELADPQLKGKFPEEEVQIMAYLAKECLLLDPDTRPTMSEVVHILSSISPGRSRRRRSIPVGLFQEAEDVDKQKQAPLSRFPACNLLPLGIENNVSVGNENKDVDKVSTEYRESLILLTSKGEKNWHASEEEMVDLTEPRFESFCMANVNNFP. 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09220 616 ProSitePatterns Serine/Threonine protein kinases active-site signature. 354 366 IPR008271 GO:0004672|GO:0006468
Seca4g09220 616 ProSiteProfiles Protein kinase domain profile. 222 509 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g09220 616 Pfam Protein kinase domain 224 506 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g09220 616 SMART serkin_6 222 511 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g09220 616 Gene3D Phosphorylase Kinase; domain 1 196 309 - -
Seca4g09220 616 ProSitePatterns Protein kinases ATP-binding region signature. 228 250 IPR017441 GO:0005524
Seca4g09220 616 SUPERFAMILY Protein kinase-like (PK-like) 202 508 IPR011009 -
Seca4g09220 616 FunFam receptor-like serine/threonine-protein kinase NCRK 196 309 - -
Seca4g09220 616 Gene3D Transferase(Phosphotransferase) domain 1 310 522 - -
Seca4g09220 616 CDD STKc_IRAK 228 508 - -
Seca4g09220 616 PANTHER OS01G0750732 PROTEIN 33 513 - -
Seca4g09220 616 FunFam receptor-like serine/threonine-protein kinase NCRK 310 520 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09220 Seca-Chr4 218804708 218810514 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09220 1 612 Receptor kinase-like Gene Family AT2G28250 52.427 0.0 582
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XVI Seca4g09220 Pkinase 2.8e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09220 - - gmx:100499641 989.949