Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09219 ATGATTCAGATTTTGATGAAGTTTCGTACAGCTTATGTTGCTCCTTCTTCCCAGGTATTTGGGAGAGGAGAACTTGTTTTAGGCTATTCTAAGATTGCAGTTAGGTACCTTCGCAAGGGTTTCTGGTTAGACTTTATTGCAGCTTTGCCTCTTCCTCAGGTGTTGATTTGGATTGTTATCCCAACTCTAAGGGGTTCAACCATGGCAAACACTAAAAATGTCCTTAGGTTTTTCATCATCTTCCAATATCTTCCGAGGTTGTTTTTGATTTTTCCACTTTCTTCACAAATTGTAAAAGCTACAGGAGTTGTGACAGAAACAGCATGGGCAGGGGCTGCTTACAACCTTATGCTTTACATGTTGGCAAGCCATATTTTAGGAGCTTGCTGGTATCTTCTATCAATCGAACGTCAAGAAGCATGTTGGAGAAGTGTGTGTGATTTGGAGAAGTCATCTTGTCAATATGGATTCTTTGACTGCCACAGGGTTGATGATGCTCTCAGGGTGTCTTGGTTTATAGCTAGTAATATCACAAATTTATGCTCACCAGACGCTGACTTTTATCAATTTGGTATATATGTTGATGCTATGACTTCTGAAGTTACTTCCTCGGCATTCTTTAATAAGTACTTCTATTGTCTCTGGTGGGGCCTAAGGAATTTGAGTTCTTTGGGACAAGGCCTTCTTACTAGCACTTTTGTTGGAGAAATAATGGTAGCCATTGTTGTTGCAACCCTTGGATTGGTTCTTTTTGCGTTGCTGATTGGTAATATGCAGACATACCTACAATCAATAACAGTTCGGCTAGAAGAGTGGAGGGTGAAAAGAACTGATACAGAACAATGGATGCATCACAGGCAACTACCACCAGAGCTAAGAGAATCTGTGCGTAAATATGATCAATATAAATGGGTGGCTACCCGAGGTGTAGATGAAGAAACTATTCTCAAAGGACTTCCATTGGATCTCAGGAGAGACATCAAGCGCCACCTTTGTCTTGAACTAGTTCGAGGAGTTCCATTGTTTGATCAAATGGATGAGAGGATGCTAGATGCAATATGTGAAAGGCTAAAGCCTGCATTGTGCACTGAAGGGACCTATCTTGTTCGTGAGGGTGATCCTGTGAATGAGATGCTCTTCATAATTAGAGGCCATCTTGATTCATACACCACAAATGGAGGCCGTGCTGGATTCTTCAACTCATGCCGTATTGGGCCAGGTGATTTCTGTGGTGAAGAGCTATTAACATGGGCCTTAGACCCAAGACCAAGTGTGATACTCCCATCTTCCACTAGAACAGTTAAAGCCATATCAGAAGTAGAGGCCTTTGCACTCATAGCTGAAGACTTAAAATTTGTTGCATCTCAATTTAGAAGACTGCACAGTAAACAACTGAGGCATAAATTCAGGTTTTACTCACACCAATGGAGAACATGGGCTGCTTGTTTCATTCAAGCTGCTTGGAGACGGCACAAGAAAAGGAAAGAAGCTGCTGAATTAAGGGCCAGGGAGAATCTTGCAGCTTCTGAGCCTGAAACACCAACATCTGGTTCAGGCTTTGTTATGTATGCAAAACCAAAAAGGGTGGGGAGGAGCACTAGGAAAGGTGTCAATATGCATTCTGGGACAGATTCTGGGGTAGTTAGTTCTTTGCAGAAGCCAGCAGAACCAGACTTTGATGAATAG 1686 0.4217 MIQILMKFRTAYVAPSSQVFGRGELVLGYSKIAVRYLRKGFWLDFIAALPLPQVLIWIVIPTLRGSTMANTKNVLRFFIIFQYLPRLFLIFPLSSQIVKATGVVTETAWAGAAYNLMLYMLASHILGACWYLLSIERQEACWRSVCDLEKSSCQYGFFDCHRVDDALRVSWFIASNITNLCSPDADFYQFGIYVDAMTSEVTSSAFFNKYFYCLWWGLRNLSSLGQGLLTSTFVGEIMVAIVVATLGLVLFALLIGNMQTYLQSITVRLEEWRVKRTDTEQWMHHRQLPPELRESVRKYDQYKWVATRGVDEETILKGLPLDLRRDIKRHLCLELVRGVPLFDQMDERMLDAICERLKPALCTEGTYLVREGDPVNEMLFIIRGHLDSYTTNGGRAGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKAISEVEAFALIAEDLKFVASQFRRLHSKQLRHKFRFYSHQWRTWAACFIQAAWRRHKKRKEAAELRARENLAASEPETPTSGSGFVMYAKPKRVGRSTRKGVNMHSGTDSGVVSSLQKPAEPDFDE. 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09219 561 Gene3D Jelly Rolls 339 459 IPR014710 -
Seca4g09219 561 MobiDBLite consensus disorder prediction 536 550 - -
Seca4g09219 561 ProSiteProfiles IQ motif profile. 477 505 IPR000048 GO:0005515
Seca4g09219 561 PRINTS EAG/ELK/ERG potassium channel family signature 121 131 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca4g09219 561 PRINTS EAG/ELK/ERG potassium channel family signature 4 13 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca4g09219 561 PRINTS EAG/ELK/ERG potassium channel family signature 304 311 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca4g09219 561 PRINTS EAG/ELK/ERG potassium channel family signature 254 263 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca4g09219 561 PRINTS EAG/ELK/ERG potassium channel family signature 210 227 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca4g09219 561 ProSiteProfiles cAMP/cGMP binding motif profile. 341 438 IPR000595 -
Seca4g09219 561 MobiDBLite consensus disorder prediction 503 561 - -
Seca4g09219 561 Pfam Ion transport protein 2 268 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Seca4g09219 561 Pfam Cyclic nucleotide-binding domain 364 451 IPR000595 -
Seca4g09219 561 SUPERFAMILY Voltage-gated potassium channels 2 263 - -
Seca4g09219 561 CDD CAP_ED 341 472 IPR000595 -
Seca4g09219 561 FunFam Cyclic nucleotide-gated ion channel 1 268 332 - -
Seca4g09219 561 SUPERFAMILY cAMP-binding domain-like 271 467 IPR018490 -
Seca4g09219 561 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 1 559 - -
Seca4g09219 561 Gene3D - 1 267 - -
Seca4g09219 561 SMART cnmp_10 341 472 IPR000595 -
Seca4g09219 561 FunFam Cyclic nucleotide-gated ion channel 1 339 457 - -
Seca4g09219 561 Gene3D Helix hairpin bin 269 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09219 Seca-Chr4 218790695 218795549 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09219 3 560 Ion Channels AT2G28260 76.157 0.0 883
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09219 K05391 - gmx:100786868 967.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04116 4 73535353 73539707 Seca4g09219 4 218790695 218795549 PCT