Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca4g09219 | ATGATTCAGATTTTGATGAAGTTTCGTACAGCTTATGTTGCTCCTTCTTCCCAGGTATTTGGGAGAGGAGAACTTGTTTTAGGCTATTCTAAGATTGCAGTTAGGTACCTTCGCAAGGGTTTCTGGTTAGACTTTATTGCAGCTTTGCCTCTTCCTCAGGTGTTGATTTGGATTGTTATCCCAACTCTAAGGGGTTCAACCATGGCAAACACTAAAAATGTCCTTAGGTTTTTCATCATCTTCCAATATCTTCCGAGGTTGTTTTTGATTTTTCCACTTTCTTCACAAATTGTAAAAGCTACAGGAGTTGTGACAGAAACAGCATGGGCAGGGGCTGCTTACAACCTTATGCTTTACATGTTGGCAAGCCATATTTTAGGAGCTTGCTGGTATCTTCTATCAATCGAACGTCAAGAAGCATGTTGGAGAAGTGTGTGTGATTTGGAGAAGTCATCTTGTCAATATGGATTCTTTGACTGCCACAGGGTTGATGATGCTCTCAGGGTGTCTTGGTTTATAGCTAGTAATATCACAAATTTATGCTCACCAGACGCTGACTTTTATCAATTTGGTATATATGTTGATGCTATGACTTCTGAAGTTACTTCCTCGGCATTCTTTAATAAGTACTTCTATTGTCTCTGGTGGGGCCTAAGGAATTTGAGTTCTTTGGGACAAGGCCTTCTTACTAGCACTTTTGTTGGAGAAATAATGGTAGCCATTGTTGTTGCAACCCTTGGATTGGTTCTTTTTGCGTTGCTGATTGGTAATATGCAGACATACCTACAATCAATAACAGTTCGGCTAGAAGAGTGGAGGGTGAAAAGAACTGATACAGAACAATGGATGCATCACAGGCAACTACCACCAGAGCTAAGAGAATCTGTGCGTAAATATGATCAATATAAATGGGTGGCTACCCGAGGTGTAGATGAAGAAACTATTCTCAAAGGACTTCCATTGGATCTCAGGAGAGACATCAAGCGCCACCTTTGTCTTGAACTAGTTCGAGGAGTTCCATTGTTTGATCAAATGGATGAGAGGATGCTAGATGCAATATGTGAAAGGCTAAAGCCTGCATTGTGCACTGAAGGGACCTATCTTGTTCGTGAGGGTGATCCTGTGAATGAGATGCTCTTCATAATTAGAGGCCATCTTGATTCATACACCACAAATGGAGGCCGTGCTGGATTCTTCAACTCATGCCGTATTGGGCCAGGTGATTTCTGTGGTGAAGAGCTATTAACATGGGCCTTAGACCCAAGACCAAGTGTGATACTCCCATCTTCCACTAGAACAGTTAAAGCCATATCAGAAGTAGAGGCCTTTGCACTCATAGCTGAAGACTTAAAATTTGTTGCATCTCAATTTAGAAGACTGCACAGTAAACAACTGAGGCATAAATTCAGGTTTTACTCACACCAATGGAGAACATGGGCTGCTTGTTTCATTCAAGCTGCTTGGAGACGGCACAAGAAAAGGAAAGAAGCTGCTGAATTAAGGGCCAGGGAGAATCTTGCAGCTTCTGAGCCTGAAACACCAACATCTGGTTCAGGCTTTGTTATGTATGCAAAACCAAAAAGGGTGGGGAGGAGCACTAGGAAAGGTGTCAATATGCATTCTGGGACAGATTCTGGGGTAGTTAGTTCTTTGCAGAAGCCAGCAGAACCAGACTTTGATGAATAG | 1686 | 0.4217 | MIQILMKFRTAYVAPSSQVFGRGELVLGYSKIAVRYLRKGFWLDFIAALPLPQVLIWIVIPTLRGSTMANTKNVLRFFIIFQYLPRLFLIFPLSSQIVKATGVVTETAWAGAAYNLMLYMLASHILGACWYLLSIERQEACWRSVCDLEKSSCQYGFFDCHRVDDALRVSWFIASNITNLCSPDADFYQFGIYVDAMTSEVTSSAFFNKYFYCLWWGLRNLSSLGQGLLTSTFVGEIMVAIVVATLGLVLFALLIGNMQTYLQSITVRLEEWRVKRTDTEQWMHHRQLPPELRESVRKYDQYKWVATRGVDEETILKGLPLDLRRDIKRHLCLELVRGVPLFDQMDERMLDAICERLKPALCTEGTYLVREGDPVNEMLFIIRGHLDSYTTNGGRAGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKAISEVEAFALIAEDLKFVASQFRRLHSKQLRHKFRFYSHQWRTWAACFIQAAWRRHKKRKEAAELRARENLAASEPETPTSGSGFVMYAKPKRVGRSTRKGVNMHSGTDSGVVSSLQKPAEPDFDE. | 562 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca4g09219 | 561 | Gene3D | Jelly Rolls | 339 | 459 | IPR014710 | - | |
Seca4g09219 | 561 | MobiDBLite | consensus disorder prediction | 536 | 550 | - | - | |
Seca4g09219 | 561 | ProSiteProfiles | IQ motif profile. | 477 | 505 | IPR000048 | GO:0005515 | |
Seca4g09219 | 561 | PRINTS | EAG/ELK/ERG potassium channel family signature | 121 | 131 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
Seca4g09219 | 561 | PRINTS | EAG/ELK/ERG potassium channel family signature | 4 | 13 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
Seca4g09219 | 561 | PRINTS | EAG/ELK/ERG potassium channel family signature | 304 | 311 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
Seca4g09219 | 561 | PRINTS | EAG/ELK/ERG potassium channel family signature | 254 | 263 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
Seca4g09219 | 561 | PRINTS | EAG/ELK/ERG potassium channel family signature | 210 | 227 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
Seca4g09219 | 561 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 341 | 438 | IPR000595 | - | |
Seca4g09219 | 561 | MobiDBLite | consensus disorder prediction | 503 | 561 | - | - | |
Seca4g09219 | 561 | Pfam | Ion transport protein | 2 | 268 | IPR005821 | GO:0005216|GO:0006811|GO:0016020|GO:0055085 | |
Seca4g09219 | 561 | Pfam | Cyclic nucleotide-binding domain | 364 | 451 | IPR000595 | - | |
Seca4g09219 | 561 | SUPERFAMILY | Voltage-gated potassium channels | 2 | 263 | - | - | |
Seca4g09219 | 561 | CDD | CAP_ED | 341 | 472 | IPR000595 | - | |
Seca4g09219 | 561 | FunFam | Cyclic nucleotide-gated ion channel 1 | 268 | 332 | - | - | |
Seca4g09219 | 561 | SUPERFAMILY | cAMP-binding domain-like | 271 | 467 | IPR018490 | - | |
Seca4g09219 | 561 | PANTHER | CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED | 1 | 559 | - | - | |
Seca4g09219 | 561 | Gene3D | - | 1 | 267 | - | - | |
Seca4g09219 | 561 | SMART | cnmp_10 | 341 | 472 | IPR000595 | - | |
Seca4g09219 | 561 | FunFam | Cyclic nucleotide-gated ion channel 1 | 339 | 457 | - | - | |
Seca4g09219 | 561 | Gene3D | Helix hairpin bin | 269 | 332 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca4g09219 | Seca-Chr4 | 218790695 | 218795549 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca4g09219 | 3 | 560 | Ion Channels | AT2G28260 | 76.157 | 0.0 | 883 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca4g09219 | K05391 | - | gmx:100786868 | 967.607 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Seca4g04116 | 4 | 73535353 | 73539707 | Seca4g09219 | 4 | 218790695 | 218795549 | PCT |