Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09211 ATGTCTGAGGATATTGGTAACATGAAGGACTCTTGGTTTTTCGACAAGAATTTTAATGCCCTCTCAGATGAGATGTTTGATGATGTCCTCAAGTTTTTTGATTTCCCTCTGGAAGATGTGGAAACTAATGCTGTGGAAGAAGACTGGGATGCTCAATTTAAACGCCTTGAAGAGCCTTGTTTTGATGTTTTTTCAGTATCATCAGCTGGGCTGTGTGGGAAAACTCAAAATGAAAATCACCAATTTGGGAAGGGCTTCTCTGCTTCTCAGTGTAATGGGATTTCCCCAATAAAACAGCTGGAAAAGACTGCAGGAGCAACATATGGAAAAACCATTCCAAACCAGAATGTCTCTTTCATTGGAAAAGATTTTAAACAGTTCCAAACCTACAGCCCAGTTTCTGTTTTTGAAAGCAGCAGCTCTTCCTCAGTTGAGAATTCCAACTTTGATCTACCTGTCATCCCAGTAAAGCGTGCTCGAAGTAAACGCATGCGTCCTTCAAGCCTCAGTCATCTATTCTCAATTCCTTTCATCCATAACTCACCAGCTTTGCAAAAATATCAAAGGACACCTGCCTCTGAATTGGATTTTGAAACATGTGTTGCTGGGAAACTACCAAACACAGTAAAAAAACAAAGGAAAAAGGATCTGTCCCTGCTATCAGGTGATGTTGAGATGATTAAGGGATCCTCATCACAGGATTCAGTTGTCCCCAGAAAATGCATGCATTGTGAGGTGACAAAGACCCCGCAATGGAGAGAGGGACCTATGGGACCCAAGACACTATGCAATGCTTGTGGTGTTCGTTACAGGTCTGGCCGCCTCTATCCTGAATACCGGCCTGCTGCTAGCCCAACTTTTGTAGCATCACTGCACTCAAACTGTCACAAAAAGGTCCTGGAGATGAGAGGAAAGGTCATGCAGGAAGCTGTTAGGGGTTCTATGCTAGCTTCATCAAATCTTCCTGGAAATTATGTAGGATAA 984 0.4278 MSEDIGNMKDSWFFDKNFNALSDEMFDDVLKFFDFPLEDVETNAVEEDWDAQFKRLEEPCFDVFSVSSAGLCGKTQNENHQFGKGFSASQCNGISPIKQLEKTAGATYGKTIPNQNVSFIGKDFKQFQTYSPVSVFESSSSSSVENSNFDLPVIPVKRARSKRMRPSSLSHLFSIPFIHNSPALQKYQRTPASELDFETCVAGKLPNTVKKQRKKDLSLLSGDVEMIKGSSSQDSVVPRKCMHCEVTKTPQWREGPMGPKTLCNACGVRYRSGRLYPEYRPAASPTFVASLHSNCHKKVLEMRGKVMQEAVRGSMLASSNLPGNYVG. 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09211 327 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 237 296 - -
Seca4g09211 327 Pfam GATA zinc finger 241 274 IPR000679 GO:0006355|GO:0043565
Seca4g09211 327 ProSitePatterns GATA-type zinc finger domain. 241 266 IPR000679 GO:0006355|GO:0043565
Seca4g09211 327 CDD ZnF_GATA 240 287 IPR000679 GO:0006355|GO:0043565
Seca4g09211 327 PANTHER GATA TRANSCRIPTION FACTOR 41 310 - -
Seca4g09211 327 Gene3D - 232 313 IPR013088 GO:0006355|GO:0008270
Seca4g09211 327 SMART GATA_3 235 285 IPR000679 GO:0006355|GO:0043565
Seca4g09211 327 FunFam GATA transcription factor 231 317 - -
Seca4g09211 327 ProSiteProfiles GATA-type zinc finger domain profile. 235 271 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09211 Seca-Chr4 218586401 218591497 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09211 21 305 C2C2-Gata Transcription Factor Family AT1G08010 40.278 4.44e-57 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Seca4g09211 GATA 7.9e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09211 - - gmx:100813303 471.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g09211 4 218586401 218591497 Seca4g09211 4 218586401 218591497 ECH