Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09210 ATGAAGGAAGGTGAAAAGGGGTTGGATCCACAACTATGGCACGCATGCGCCGGAGGCATGGTTCAAATGCCACCGGTGAACTCCAAAGTGTTCTACTTTCCACAAGGGCATGCCGAACACGCACAGTGCAACGTTGATTTCGGAGCTTCCCTGAGGATTCCACCACTCATTCTCTGCCGCGTGGCAGCTGTGAAATTCTTAGCCGACCCAGAAACCGATGAAGTCTTTGCAAGGATAAGCTTGGTTCCTCTAAGGAATTCAGAGCTTGATTACGAAGATGGTGGTGGTGGTGATGGCAATAATGCCTCCGAAAATTCAGAAAAGCCTGCATCTTTTGCAAAGACGTTAACTCAATCCGATGCCAACAATGGTGGGGGGTTCTCTGTTCCGAGGTACTGTGCAGAAACCATCTTTCCCCGTCTTGATTACTCGGCTGAACCGCCGGTTCAGACCGTGATCGCCAAGGACGTTCACGGTGAGGTTTGGAAATTCAGGCATATTTATAGAGGCACGCCACGTCGCCACTTGCTTACAACTGGGTGGAGCAGTTTCGTGAACCAGAAGAAACTGGTTGCAGGGGATTCTATTGTGTTTCTGAGGGCTGAAAATGGGGATCTCTGCGTTGGGATTCGAAGGGCCAAGAGGGATATTGTTGGTGGGTCAGATGCACCTTCTGGTTGGAGCTCTGGTACTGGAAGTGTTGGTCTTGGACCTTATGGGGCTTTTTCTGTTTTCTTGAAAAATGGTTGTGGAAACTCCTCAAGCCCTGGTGGTGGTAATAATCTTTGTGGAAGAAGACCAAAAGTGAGTCCTGAATCTGTGAGGGAAGTTATGACACTTGCTGCTAGCTATCAACCTTTTGAGGTTGTTTATTACCCTAGAGCAAGCACCCCTGAGTTTTGTATTAAGACTTCAGCTGTTAGGGCAGCTATGAGAATTCAATGGTGCCCTGGGATGAGGTTTAAGATGCCCTTTGAAACTGAGGATTCTTCTAGGATCAGCTGGTTTATGGGGACCATAGCTTCTGTTCAGGTTGTTGATCCTATCCGTTGGCCTAATTCCCCTTGGAGACTTCTTCAGGTTACTTGGGATGAGCCAGATTTGCTACACAATGTGAAGCGTGTAAGCCCATGGTTGGTTGAGTTGGTATCAAACATGAATGTAATCCATCTCACACCCTTTTCTCCACCAAGGAAGAAGCTAAGGTTTCCACAACACCCAGACTTCCCCCTTGATGTTCAATTTCCAATACCACCAACATTTTCAGGCAACCCCCTTGGGCCTAATAGCAGCCCCTTGTGTTGTCTATCTGATAATGCTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAAATTGGAATATCTTTGTCAGATCTCCACCTTAACAATAAACTTCAGTTGGGGGTGCTTCCAACTAATGTCCATCAACTTGATTTGCACACTGGGATTTCTAATGGCAACATAACCAACCATGATAACAAGAGCAAAGAAAATTTATCATGCTTGCTGACCATGGGAAATTCAAACAAGAGTTTGGAGAAATCTGATAATGTTAAGAGACACCAATTTTTGCTTTTTGGTCAACCAATACTCACTGAGCAACAAATCTCTAGAAGGGCTTCTAGTGATGTGTTGTCTCAGAATTGTAGAGAGAAAAACTCACCACTAGATGAGAATAAGGACAAGGACAAAGACAAAGAGAAGTGGTTTTTTACTAGTGATTCACAATCTTCAGTTTCACCAGGAAATGGTGAGTTTTCTTGGCAAGTTGGTTTGGATACCGGTCATTGCAAGGTTTTCATGGAGTCAGAAGATGTGGGAAGGACACTTGACCTGTCACGTCTTGGTTCTTATGAAGAACTGTACAGAAGACTGGCCAACATGTTTGGAATAGAAAAGTCTGATATGTTGAGTCATGTACTCTACCGTGATGCAACAGGTGCTCTTAAACAAACTGGAGAAGAACCCTTCAGTGACTTCATGAAAACAGCAAAAAGATTGACAATTCTGACAGATTCAGGCAGCAAAGATACTAGAAGGGTTTGGATTACAGGAACTCGGAATGCTGAACGTGGATTAGATGCATCAAACAAGACAGGTCCTCTGAGCATATTTGCTTAA 2121 0.4503 MKEGEKGLDPQLWHACAGGMVQMPPVNSKVFYFPQGHAEHAQCNVDFGASLRIPPLILCRVAAVKFLADPETDEVFARISLVPLRNSELDYEDGGGGDGNNASENSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFLRAENGDLCVGIRRAKRDIVGGSDAPSGWSSGTGSVGLGPYGAFSVFLKNGCGNSSSPGGGNNLCGRRPKVSPESVREVMTLAASYQPFEVVYYPRASTPEFCIKTSAVRAAMRIQWCPGMRFKMPFETEDSSRISWFMGTIASVQVVDPIRWPNSPWRLLQVTWDEPDLLHNVKRVSPWLVELVSNMNVIHLTPFSPPRKKLRFPQHPDFPLDVQFPIPPTFSGNPLGPNSSPLCCLSDNAPAGIQGARHAQIGISLSDLHLNNKLQLGVLPTNVHQLDLHTGISNGNITNHDNKSKENLSCLLTMGNSNKSLEKSDNVKRHQFLLFGQPILTEQQISRRASSDVLSQNCREKNSPLDENKDKDKDKEKWFFTSDSQSSVSPGNGEFSWQVGLDTGHCKVFMESEDVGRTLDLSRLGSYEELYRRLANMFGIEKSDMLSHVLYRDATGALKQTGEEPFSDFMKTAKRLTILTDSGSKDTRRVWITGTRNAERGLDASNKTGPLSIFA. 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09210 706 Gene3D - 110 214 IPR015300 -
Seca4g09210 706 FunFam Auxin response factor 315 388 - -
Seca4g09210 706 Pfam B3 DNA binding domain 112 213 IPR003340 GO:0003677
Seca4g09210 706 Gene3D - 315 388 - -
Seca4g09210 706 FunFam Auxin response factor 110 214 - -
Seca4g09210 706 SUPERFAMILY DNA-binding pseudobarrel domain 107 213 IPR015300 -
Seca4g09210 706 MobiDBLite consensus disorder prediction 90 111 - -
Seca4g09210 706 ProSiteProfiles PB1 domain profile. 594 674 IPR000270 GO:0005515
Seca4g09210 706 MobiDBLite consensus disorder prediction 542 565 - -
Seca4g09210 706 ProSiteProfiles B3 DNA-binding domain profile. 112 214 IPR003340 GO:0003677
Seca4g09210 706 CDD B3_DNA 111 212 IPR003340 GO:0003677
Seca4g09210 706 Pfam Auxin response factor 279 360 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Seca4g09210 706 SMART B3_2 112 214 IPR003340 GO:0003677
Seca4g09210 706 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 673 IPR044835 GO:0003677|GO:0006355|GO:0009725
Seca4g09210 706 Gene3D - 593 678 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09210 Seca-Chr4 218573986 218577269 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09210 1 676 B3 DNA Binding Superfamily AT4G30080 61.144 0.0 771
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Seca4g09210 B3 4.5e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09210 - - gmx:100778135 1139.41