Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09207 ATGGCGAAAGACGTTGAGGTTGCAGAGCAAGCTTCATACTCAGCTAAGGACTACCATGACCCACCTCCAGCTCCTTTGATCGACCCAGAGGAGCTCACTAAGTGGTCTTTGTACAGAGCCGCCATAGCAGAATTCATAGCAACCCTTCTCTTCCTTTACATCACTGTGTTGACCATTATTGGTTACAAGAGACAGACTGACACAAACATTCCAGGTAACACAGAGTGTGATGGTGTTGGCATTTTGGGCATAGCTTGGGCCTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCTGGAGGGCACATCAACCCAGCGGTGACATTTGGGTTGTTCCTGGCACGCAAGGTGTCTCTTGTAAGGGCGTTACTTTACATGATAGCACAGTGTTTAGGTGCTATCTGTGGTGCTGGACTTGCCAAGGCCTTCCAAAAATCATACTACAACAGGTATGGAGGTGGGGTTAACTTGGTGTCAGATGGATATAACAAAGGCACAGCTTTGGGAGCTGAGATCATTGGTACCTTTGTTCTTGTCTACACTGTCTTCTCTGCTACTGATCCTAAGAGGAGCGCTAGGGACTCTCATGTTCCTGTGTTGGCACCACTCCCAATTGGATTTGCTGTGTTCATGGTTCACTTGGCTACAATCCCTGTTACCGGTACTGGCATTAACCCAGCAAGGAGTTTTGGACCAGCTGTGATCTTCAACAATGACAAAGCCTGGGATGACCAATGGATTTACTGGGTTGGACCATTTGTTGGGGCTTTGGCGGCTGCAATCTACCACCAATACATTCTAAGAGCAGCAGCCATCAAGGCTCTTGGATCCTTCAGGAGCAACGCTTAA 861 0.4808 MAKDVEVAEQASYSAKDYHDPPPAPLIDPEELTKWSLYRAAIAEFIATLLFLYITVLTIIGYKRQTDTNIPGNTECDGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYMIAQCLGAICGAGLAKAFQKSYYNRYGGGVNLVSDGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGPAVIFNNDKAWDDQWIYWVGPFVGALAAAIYHQYILRAAAIKALGSFRSNA. 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09207 286 ProSitePatterns MIP family signature. 106 114 IPR022357 -
Seca4g09207 286 FunFam Probable aquaporin PIP1-2 24 286 - -
Seca4g09207 286 Gene3D Glycerol uptake facilitator protein. 24 286 IPR023271 -
Seca4g09207 286 PRINTS Major intrinsic protein family signature 210 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca4g09207 286 PRINTS Major intrinsic protein family signature 174 192 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca4g09207 286 PRINTS Major intrinsic protein family signature 250 270 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca4g09207 286 PRINTS Major intrinsic protein family signature 125 144 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca4g09207 286 PRINTS Major intrinsic protein family signature 88 112 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca4g09207 286 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca4g09207 286 CDD MIP 39 270 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca4g09207 286 Pfam Major intrinsic protein 31 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca4g09207 286 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 7 275 IPR034294 -
Seca4g09207 286 SUPERFAMILY Aquaporin-like 30 272 IPR023271 -
Seca4g09207 286 NCBIfam MIP family channel protein 43 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09207 Seca-Chr4 218298565 218300196 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09207 1 284 Major Intrinsic Protein MIP AT5G60660 79.577 7.68e-170 470
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09207 K09872 - gmx:732604 551.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04094 4 72792011 72793793 Seca4g09207 4 218298565 218300196 PCT