Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09205 ATGCGATTGCTATGGGGGCTAAGGTTGCCCCTACTCATACTAATTCAACTTTTATCAACCTGCAAATTATCTGCTGAAGCTTTGTTCACTTTCAAAGGTTCTCTTGGCAGTCCACAGCAATTGGGATGCAGCATTGTGAAATATCCATGTCAAATGCAATGGCCTTTTTTTGACTGCTATAAACTAAAAGATCCAGGTGGAATAACAGCGAAGATAGATGGGAATAATGACATTCCAACACATACACCTCTTCAAGAAGCTCAAGTTGACAAACCAGGAGGACGAAGGGTTGTTGCTATTGTTGGTGGCATTGTTGCTGCCTTAGTCATCATTGTCATTGTGGTGATTGTCTATATCTGCCTGAGGCGTCTTAAAAGATTTATAAGGCAAACATCTGACACTGCATCTTCTACGCCATCTCCAACTGTTGAGATGGGAAGAGTGAACACCTCAGAGTATGTAAAAGCTTTCTCTCCACATTATCCACAGAACACCACAAGGCAGTTAACAATTTTGGAACTAGAACAAGCTACACTAAATTTCAGCCAAAGTAATATTATAGGTGAAGGTGGATTTGGTGTTGTATACAAGGGATTGCTTCAAGATGGATCTATTGTGGCTATAAAAAGGCGCCTATTTGTTCTGATACAAGATTTCATCCCTGAGGTGAAACAGATAGCTCATATCCACCACATTCATCTTGTCAAGCTTATAGGCTATTATGAAGATAGCTATCAACAATTACTTGTGTATGAATATCTCCCTAATGGAAATGTAGGGAGTCACCTATATGACAGTAAAGGTTTGCCTATTGGAAAGTTAGACTTGCGGAGAAGGTTATCCATTGCTATAGGCGCGTCCAAAGGACTGGAACATCTTCACAGTTTGGTCCCTCCTAAGGTTCACACAAATTTTAGAACTAGCAATGTTCTGTTAGATGAAAATTATACCGCCAAGGTTTCTGATTATGGATTCTGCAAATTGCATACAAAAATTGATCAGGCTAGATCATCTTCAAATGTAGACTACTTTCTTGACCCAGAGTTGAGCTTATCAGAAAAGTATTCGGAGCAGAGTGATGTATACAGTTTCGGGGTGTTCTTAATAGAGTTGATAAGTGGCTGTGAAGCACATAGTAGAAACATGTCAAATCCAGATGAAAATCTAGTGTTTCAGGCAAAAGGTAGCACTAGCTTGGACAAGTTTGTTGACATAACGCTGGGAGACCAAGAAAAGCATGCTGCAAGACAAATGATGAATTTGGCGTTGTTATGTATGGATTTGACTTTTAGAAGACCATCAATGGCTCAAATTATGCAAGAGCTGGAGAGAATTCAAAGAGACATTGCTCCTTTGTATTCTCAAGTCAATGAGGAGATAGGTGTGGTGACTCTTGGGAGTGAGCTCTTTCAATAA 1416 0.3976 MRLLWGLRLPLLILIQLLSTCKLSAEALFTFKGSLGSPQQLGCSIVKYPCQMQWPFFDCYKLKDPGGITAKIDGNNDIPTHTPLQEAQVDKPGGRRVVAIVGGIVAALVIIVIVVIVYICLRRLKRFIRQTSDTASSTPSPTVEMGRVNTSEYVKAFSPHYPQNTTRQLTILELEQATLNFSQSNIIGEGGFGVVYKGLLQDGSIVAIKRRLFVLIQDFIPEVKQIAHIHHIHLVKLIGYYEDSYQQLLVYEYLPNGNVGSHLYDSKGLPIGKLDLRRRLSIAIGASKGLEHLHSLVPPKVHTNFRTSNVLLDENYTAKVSDYGFCKLHTKIDQARSSSNVDYFLDPELSLSEKYSEQSDVYSFGVFLIELISGCEAHSRNMSNPDENLVFQAKGSTSLDKFVDITLGDQEKHAARQMMNLALLCMDLTFRRPSMAQIMQELERIQRDIAPLYSQVNEEIGVVTLGSELFQ. 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09205 471 ProSitePatterns Protein kinases ATP-binding region signature. 187 209 IPR017441 GO:0005524
Seca4g09205 471 Pfam Protein tyrosine and serine/threonine kinase 184 442 IPR001245 GO:0004672|GO:0006468
Seca4g09205 471 SUPERFAMILY Protein kinase-like (PK-like) 162 453 IPR011009 -
Seca4g09205 471 Gene3D Transferase(Phosphotransferase) domain 1 254 462 - -
Seca4g09205 471 ProSiteProfiles Protein kinase domain profile. 181 445 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g09205 471 FunFam receptor-like serine/threonine-protein kinase NCRK 154 253 - -
Seca4g09205 471 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 107 445 IPR047117 -
Seca4g09205 471 Gene3D Phosphorylase Kinase; domain 1 143 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09205 Seca-Chr4 218244610 218248743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09205 100 443 Receptor kinase-like Gene Family AT3G46290 35.097 7.41e-52 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXa Seca4g09205 PK_Tyr_Ser-Thr 2.9e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09205 - - gmx:100815066 694.501