Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09201 ATGAGTGCTGAGGAAAAACGTGATGCACCTTCTCGCAAACGAACAGCTTCTCTCCCAGTTCCCAAGGTTGATGATCTAATGGAGGTAGCTGATGAAAATTCACATGCTCATCATTGGAAGCGACAAAATCTTCTTCTGGAAATACCATCCAGAACAACACCAGAAGAGCTTTCTTCTTCTAAGGATTTTGTTGCAATAAGGATGCCACTGACACCAAGTCCAACTCCAACCCATAAGAAAGTGAATTTTCTTGTGACTTCTCGCTCTGTTGATGCTCCGAGTAATAACTGTCCAGGGCCTTCAGCATCAAGAGCCAAATCATCATCCATAAGAAGCATCTTACCTAAAATTGGCTTCAGGAATCGGACTTCATCAGATATTGAAAAGGCTATAACTGCAGTTCCAGAAGGTTCCTCTTCAGGTCCTCAAGAAATCAAGTCTTCAATCTCAAGATCAGTGTCCTTGTCTAAGATATTTACTCCTAAGATTAAGAGAACGTCATCATTACCAGTAGAAGAAATTGGGCGTGCTAACACAGAATCTTCTCTGAGTGGATGTATTGCTGGTTCTCCATATAGAAGAGAGACCCAGGGGACTATAGCTCGCACTCGTTCAGAGCCTGTCAACAACCAAGATAAAAGCATGAGGAAAATGGATAGGTTCTTCCGGGTTATTCCTTCCACCCCTCGAGTAAAGGAAGTGAATGAATGTTTGAACTCATCCACAGAAAAGGATACCGGTATCTTATTTAAAAATGATGGTGATGGTGAAGATATAGCTGAAGAGGAAGCTGTGTGTAGAATTTGTCTGGTTGATCTATGTGAAGGAGGTGAGACATTCAAGCTGGAATGTAGCTGCAAAGGTGAACTTGCTCTGGCTCACCAAGAATGTGCTGTTAAGTGGTTTAGTATCAAAGGTAATAAGACCTGTGATGTGTGCAAGGAGGAGGTTCGGAACCTCCCTGTCACTCTCTTACGGATCCAGACTGTTCGAACTCAGAATAATGGAGCAAGGTCTACGCAGGAAGATGACTTCAGTATTGTTACACACAGCACTTTTAATTTGTCTGCTCAATTTGACAGGATTTGGCAGGAACTGCCGGTGCTTGTCATTGTCAGCATGCTTGCTTATTTCTGTTTCCTTGAGCAGCTATTGGTTGGAAAAATGGGAACCAAAGCAATTTTCATATCTCTTCCATTTTCATGTGTACTTGGTCTACTCTCCTCAATGACATCATCAACAATGGTGAAGAGCAGCAAGTTCATCTGGATTTATGCAGCTGCCCAATTTGCTTTGGTGGTTCTCTTCGCACATATATTTTACTCCATGGTTGGTAAGCAAGCAGTTCTGTCAATCCTTCTTGCATCATTTGCTGGGTTTGGTGTAGTGATGAGTGGAAGTTCAATTCTTGTGGAGTTAGTCAGATGGAAAAGAAGATGGCAGGCTTTATCAGAGCATCAGAATCAGCATGCTTCTCAAGTAATGACACAAGATGGACAATATTCTCATTCAGGCCTTCCCAACAGCAGTCAAACTGCTGTGTAA 1545 0.4239 MSAEEKRDAPSRKRTASLPVPKVDDLMEVADENSHAHHWKRQNLLLEIPSRTTPEELSSSKDFVAIRMPLTPSPTPTHKKVNFLVTSRSVDAPSNNCPGPSASRAKSSSIRSILPKIGFRNRTSSDIEKAITAVPEGSSSGPQEIKSSISRSVSLSKIFTPKIKRTSSLPVEEIGRANTESSLSGCIAGSPYRRETQGTIARTRSEPVNNQDKSMRKMDRFFRVIPSTPRVKEVNECLNSSTEKDTGILFKNDGDGEDIAEEEAVCRICLVDLCEGGETFKLECSCKGELALAHQECAVKWFSIKGNKTCDVCKEEVRNLPVTLLRIQTVRTQNNGARSTQEDDFSIVTHSTFNLSAQFDRIWQELPVLVIVSMLAYFCFLEQLLVGKMGTKAIFISLPFSCVLGLLSSMTSSTMVKSSKFIWIYAAAQFALVVLFAHIFYSMVGKQAVLSILLASFAGFGVVMSGSSILVELVRWKRRWQALSEHQNQHASQVMTQDGQYSHSGLPNSSQTAV. 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09201 514 SMART ringv_2 265 314 IPR011016 GO:0008270
Seca4g09201 514 SUPERFAMILY RING/U-box 262 317 - -
Seca4g09201 514 PANTHER OS02G0165000 PROTEIN 17 495 - -
Seca4g09201 514 MobiDBLite consensus disorder prediction 1 22 - -
Seca4g09201 514 Pfam RING-variant domain 266 313 IPR011016 GO:0008270
Seca4g09201 514 CDD RING_CH-C4HC3_MARCH 266 314 - -
Seca4g09201 514 ProSiteProfiles Zinc finger RING-CH-type profile. 258 320 IPR011016 GO:0008270
Seca4g09201 514 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 253 321 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09201 Seca-Chr4 218189192 218194875 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09201 255 320 C3H Transcription Factor Family AT2G37950 46.269 3.97e-13 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09201 - - cam:101488558 619.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04082 4 72696931 72702089 Seca4g09201 4 218189192 218194875 PCT