Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09197 ATGATCATGGGAGAATATCAGAGTTTTTCATTTTCCAGAATGATGGGCTGCTTTAGTTGCTTCGGGTTGATCAAAAAACAAAAACGTCGACGGACTAAGCGTGGCATCAACAATTTTCTCTCCCACGGGCTATTGACGGATGGAGAAACTGAAGGTGATGAGGTTTCATATAGTGGTGAGGCTACTAGTAACACCACCAGTGGAGATGATAATGAGGTGCAAATTTTACCCAACCGTTCTGAGGAAATTTTGACCTTCAGAGCTGAGAATGGCATGATTTGTAGGCCGTTTCCTGTTAAGGAGACTTGCAAACTTGTTCGCTCAGAGGATGAAAATGGGAACAAGATGATAAATGAGTATATTCGAGAATATAAGATTGGTTCTGGTAGCTATGGCAAAGTGGCTCTTTATCGAAGTTCTGTTGATGAAAAGCATTATGCAATTAAGGCCTTTCATAAGTCTCATTTACAGAAGCTTCGAGTTGCACCATCTGAGACTGCCATGACTGATGTTCTACGTGAGGTAATGATTATGAAAATGCTGGAACATCCTAATATAGTCAATCTGATTGAGGTGATTGATGACCCAGAGTCGGATGACTTCTACATGGTACTTGAATATGTGGAAGGCAAATGGGTTTGTGAGGGTTCAGGTCGTCCTTGTGCCTTAGGTGAAGAGACTGCTAGGAAATACTTGCGTGATATAGTCTCGGGATTAACATATCTTCATGCTCATAATATAGTTCATGGAGATATAAAACCTGATAATCTGTTAATTACTCGTCATGGCAAAGTAAAGATAGGGGATTTCAGTGTCAGCCAAGCTGTTGAGGATGGTAATGATGAACTTCGGCGATCACCTGGCACTCCTGTTTTCACTGCACCAGAATGTTGTTTAGGCCTTACTTATCATGGTAAAGCTTCAGATACGTGGGCAGTAGGAGTTACTTTGTACTGTATGATATTGGGTGAATACCCATTTCTCGGAGACACACTTCAAGATACATATGACAAAGTAAGAAATACATTAACTTCTTACCCCAAATCTGAGCATGTTGTTTTCTTCCTTGTCCAGATAGTCAATAATCCTATAGATATCCCAGATGACATTAACCCGCAGTTAAAGAATTTAATAGAAGGATTACTTTGCAAAGACCCAAAACTAAGGATGACATTGGGTGAGGTTGCGGAGCATAGTTGGGTTATTGGAAATGATGGGCCAATTGGTGAGTACTTGTGTTGGTGCAAACGCAAGAGCCTGCAGAGGGAAGACTTTGACGAGAGCAATCTGCTTTCATGA 1299 0.4103 MIMGEYQSFSFSRMMGCFSCFGLIKKQKRRRTKRGINNFLSHGLLTDGETEGDEVSYSGEATSNTTSGDDNEVQILPNRSEEILTFRAENGMICRPFPVKETCKLVRSEDENGNKMINEYIREYKIGSGSYGKVALYRSSVDEKHYAIKAFHKSHLQKLRVAPSETAMTDVLREVMIMKMLEHPNIVNLIEVIDDPESDDFYMVLEYVEGKWVCEGSGRPCALGEETARKYLRDIVSGLTYLHAHNIVHGDIKPDNLLITRHGKVKIGDFSVSQAVEDGNDELRRSPGTPVFTAPECCLGLTYHGKASDTWAVGVTLYCMILGEYPFLGDTLQDTYDKVRNTLTSYPKSEHVVFFLVQIVNNPIDIPDDINPQLKNLIEGLLCKDPKLRMTLGEVAEHSWVIGNDGPIGEYLCWCKRKSLQREDFDESNLLS. 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09197 432 SUPERFAMILY Protein kinase-like (PK-like) 115 413 IPR011009 -
Seca4g09197 432 MobiDBLite consensus disorder prediction 49 71 - -
Seca4g09197 432 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 71 404 - -
Seca4g09197 432 ProSitePatterns Serine/Threonine protein kinases active-site signature. 247 259 IPR008271 GO:0004672|GO:0006468
Seca4g09197 432 Pfam Protein kinase domain 122 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g09197 432 ProSitePatterns Protein kinases ATP-binding region signature. 126 149 IPR017441 GO:0005524
Seca4g09197 432 Gene3D Transferase(Phosphotransferase) domain 1 219 407 - -
Seca4g09197 432 CDD STKc_LKB1_CaMKK 126 401 - -
Seca4g09197 432 MobiDBLite consensus disorder prediction 56 71 - -
Seca4g09197 432 SMART serkin_6 120 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g09197 432 FunFam Serine/threonine-protein kinase GRIK2 110 431 - -
Seca4g09197 432 Gene3D Phosphorylase Kinase; domain 1 114 217 - -
Seca4g09197 432 ProSiteProfiles Protein kinase domain profile. 120 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g09197 432 FunFam Serine/threonine-protein kinase Ssp1 114 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09197 Seca-Chr4 218035158 218040891 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09197 126 390 CBL-interacting serine-threonine protein kinases AT5G35410 34.082 1.04e-40 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-LKB Seca4g09197 Pkinase 1.4e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09197 K00908 - gmx:100776013 717.227