Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09191 ATGGGGAAGAAGCAGAAGCAGAAGATCGTTCTTCCACCGGACCTCCCGCCGGAGATTCCAGACGACGAAGTTGAGATATCCGACGATGACCTCCAATTCGTCAAGGAGAACCGCGCCTATGCCTCCTTGCTTTCCAATTTGGACACCCAATCAATCACCAAGCATGTCACACGGGTTGCTGATGCCAAAGACGATGCCTTGGAGAAACTTTATGAGCAACGCTCGCAAAGAAATGCTCTCAAGAAAGAAAAAGAAGAAACAGGTATCCAGGTTGATCGTGTAGATGCTCTTCCAGTCAAGACATTGGATGGAAAACTCTATTACCGTACAGATACAAAGACAGTATCAGAAAATGGTCCAAGTGAAGAGGAAACTGGAGAGGATGGCAATGCAGACAAAGGTCTAGTGAAGCTAACCAAGGCCGAAAAGCGAGCTAAACTTAAGAAAATAAGAAAAGAGGAAAAAAAACAAGGGAAAGAGGTGGCTAAAGCAGAAGTGGCAGAAACACCACAAGCAGCAGTATTGGCTGAGGTTAAAGAAGACCTTAAAGCTGAGGAGACATTTGAAAGTAAAAAGTGTAAACTTGCAGAATTGGGAAATGCCTTGCTTACAGACCCAGAGTCCAATATTAAATCGCTGAAGGAGATGGTACAGATATCTAAAGATAATGATCCTACCATTGTTAAACTTGGACTGCTATCCCTCTTGGCTGTTTTCAAAGATATTGTCCCTGGCTATCGAATCAGGCTTCCTACTGAGAAGGAACTAGAGATGAAGGTTTCAAAGACTGTTAGAAAGATGCGTTATTATGAATCAACTCTTCTTTCTGCATACAAGGCATACTTGCAAAGGCTGATAGCCTTAGAAACAAAGCCTTTATTTCAGCATGTTGCAGTTCGTTGTATTTGTTCTTTGCTTGATGCAAATCCCCATTTCAACTTTCGTGAAAGCTTGTTGGATGCTACTGTCAGAAACATAAGCTCCACTAATGAGGCCATCAGGAAACTTTGTTGTTCCACAATTAAGTCACTCCTTACAAATGAAGGTAAACATGGTGGTGAAGTTACTGTGGAGGCTGTTCGATTGATTTCCGATCATGTTAAAGCTCATAATTGCCAGTTGCACCCTGATTCCGTTGAGGTTTTCTTGTCTCTTTCATTTGATGTGGATCTTGGGAAGTCTGAAAAGATAGATGAGGATACGAAATCAAAAAACAAGAAAAGTAAGAAAAGAAAAAACATGGAGGCATCAAATCAGTTGCCAGAAAATGACAAAAAGAAAAGTAGGCAAGAGTCGATTTCTAAGACAAGAGAGGAGGTTGAAGCTGATTACAAGGCTGCATCCTTTACCACAGATGTTATGGAGCGGAGAGAGATGCAAACTAAAACACTCTCTGCTATGTTTGAGACATACTTTCGCATTTTGAAACATACAATGCAGTCCATAGTTGTCAGGCCTGAAGCAAATCCTGGGGCATTATCTGCTACAGTGGAATCCCACCCATTGCTTGATCCATGTTTGAAAGGACTGGCGAAATTTTCACACCTGATTGACCTTGATTTCATGGGTGATCTAATGAAACATCTGAAAATACTTGCTTCTGGAAGTAGCAACTCAAGCAACACTTCTGAGAAGTCTCCTAAATGTTTGAGCGTATCTGAACGTCTCCAATGTTGCATTGTTGCTTTTAAAGTGATGAGGACCAATCTTGATGCCTTGAATGTTGATTTACACGACTTCTTTGTCCATCTTTACAATCTCGTACTTGAATACATGCCAGGAAGAGATCAAGGAGAGGTGTTAGCAGAAGCTTTGAAGATAATGTTGTGTGACGATAGGCAACATGACATGCAAAAGACTGCTGCATTTATAAAACGTTTGGCTACATTGTCACTGTGCGTTGGATCTGCTGATTCCATGGCTGCATTGGTCACAGTAAAGCATCTCCTTCTGAAGAATGTCAAGTGCAGAAATCTGTTGGAAAATGACACTGGAGGGGGTTCTGTTTCTGGCACAATTGCAAAATATCAACCATATTCCACAGACCCTAATTTAAGTGGTGCCCTTGCCTCAGTGCTTTGGGAACTCAGTCTTTTGTCTAAGCATTATCATCCAGCCATATCAACAATGGCATCAGGCATTTCAAGCATGAGTACTGCACATAACCAAGTTTTACACTCCAAGTCCTCTCCTCAACAAGCTTTTAAGGACATGTCTCTTGACCAGGAATTGTGTTTCACACAAAGTAGCAGTATAAAATTAAGTAACAAGAGGAGGAAAACAAATGCCAGTGCTACATCACCTTCCATTAGTTCTACAACAGTAATGAGTTCATTCAATGAGGATGAGTTGCGGAGGAAACTCAATTCCCATTTTATGCTCCTTCATGACATCAAGGAAAATGAAAGGTTGAGAAGTGAGTTGGATAGGACTTCAAGATCACTACAGCTATATGAACAGTATAAGAAACAAAAGAAGCAACGATCAAAACCAAGAAGATGA 2502 0.4113 MGKKQKQKIVLPPDLPPEIPDDEVEISDDDLQFVKENRAYASLLSNLDTQSITKHVTRVADAKDDALEKLYEQRSQRNALKKEKEETGIQVDRVDALPVKTLDGKLYYRTDTKTVSENGPSEEETGEDGNADKGLVKLTKAEKRAKLKKIRKEEKKQGKEVAKAEVAETPQAAVLAEVKEDLKAEETFESKKCKLAELGNALLTDPESNIKSLKEMVQISKDNDPTIVKLGLLSLLAVFKDIVPGYRIRLPTEKELEMKVSKTVRKMRYYESTLLSAYKAYLQRLIALETKPLFQHVAVRCICSLLDANPHFNFRESLLDATVRNISSTNEAIRKLCCSTIKSLLTNEGKHGGEVTVEAVRLISDHVKAHNCQLHPDSVEVFLSLSFDVDLGKSEKIDEDTKSKNKKSKKRKNMEASNQLPENDKKKSRQESISKTREEVEADYKAASFTTDVMERREMQTKTLSAMFETYFRILKHTMQSIVVRPEANPGALSATVESHPLLDPCLKGLAKFSHLIDLDFMGDLMKHLKILASGSSNSSNTSEKSPKCLSVSERLQCCIVAFKVMRTNLDALNVDLHDFFVHLYNLVLEYMPGRDQGEVLAEALKIMLCDDRQHDMQKTAAFIKRLATLSLCVGSADSMAALVTVKHLLLKNVKCRNLLENDTGGGSVSGTIAKYQPYSTDPNLSGALASVLWELSLLSKHYHPAISTMASGISSMSTAHNQVLHSKSSPQQAFKDMSLDQELCFTQSSSIKLSNKRRKTNASATSPSISSTTVMSSFNEDELRRKLNSHFMLLHDIKENERLRSELDRTSRSLQLYEQYKKQKKQRSKPRR. 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09191 833 Coils Coil 801 821 - -
Seca4g09191 833 MobiDBLite consensus disorder prediction 757 776 - -
Seca4g09191 833 Pfam CBF/Mak21 family 556 711 IPR005612 -
Seca4g09191 833 PANTHER NUCLEOLAR COMPLEX PROTEIN 3 3 819 IPR016903 -
Seca4g09191 833 MobiDBLite consensus disorder prediction 412 439 - -
Seca4g09191 833 PIRSF Noc3 1 812 IPR016903 -
Seca4g09191 833 MobiDBLite consensus disorder prediction 111 137 - -
Seca4g09191 833 SUPERFAMILY ARM repeat 212 633 IPR016024 -
Seca4g09191 833 MobiDBLite consensus disorder prediction 116 137 - -
Seca4g09191 833 Coils Coil 63 83 - -
Seca4g09191 833 MobiDBLite consensus disorder prediction 1 23 - -
Seca4g09191 833 Pfam Nucleolar complex-associated protein 191 281 IPR011501 -
Seca4g09191 833 MobiDBLite consensus disorder prediction 398 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09191 Seca-Chr4 217937282 217948286 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09191 1 808 Core DNA Replication Machinery Family AT1G79150 58.637 0.0 916
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09191 K14834 - gmx:100776136 1263.06