Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09189 ATGATGTCTGAAGAAGCACTTTCTTCTGTTCCTTCCAAGCTCTTAGTTCAACCTCATGATCACCAAAACTCATCAAACCCTAATTCAAATTCAGTTAAGAGAAAAAGAAGTCTACCCGGAACACCAGATCCAGATGCAGAAGTGATTGCTCTGTCACCAAAGTCACTGATGGCAACGAACCGTTTCGTGTGCGAAGTGTGCAACAAGGGTTTTCAGAGAGACCAGAACCTGCAACTGCATCGGCGTGGGCATAATCTCCCATGGAAGCTTAAGCAGAGAACGAACCAAGAGGTGAAGAAGAAGGTTTATGTTTGTCCAGAGAAGAGCTGCGTACACCATGACCCTTGCAGAGCACTGGGAGACCTCACAGGGATAAAAAAGCACTTCAGCAGAAAGCACGGTGAGAAGAAGTGGAAGTGCGAAAAGTGCTCTAAGAAATACGCAGTTCAATCTGATTGGAAGGCCCATAGCAAGATTTGTGGGACTAGAGAGTACAGATGTGACTGTGGCACACTATTCTCCAGGAAGGATAGCTTCTTAACGCATAGAGCCTTTTGTGATGCCTTGGCGGAAAGAAGTGCAAGACTAACTTCAATTCCATTAGTTTTATCTAACTTTGGAAATGATCCTTTGATGATGAACGCTCAAGCAGTACCCAGAAATATCTCGCAGAGTTTATTTGGGTTTCATCATGAATTGGATGGGTCAGGCCCAGAATCGTTCATGGGGAATTTTGTTGACTATGGGCAGAAGAGGGTGTCACAATGGAATAATAATCCTCAGCTTCATCAAGTATTAATCTCAAACTCTTGTTGCACCACCTTGCCTGATTTAGTCCAAACAACTAACAACAACAACAGCATGTTTGGGTCATCACCAGAAGCAACACAGTGGGTGAATTGCCGATACCCAGAAGCATCATCATTTACAACATTGCCACATGGACTGAAGATAGAGCCAGAAGAAAACAAAGGGGACTTGTCACATAGTGGAATAAGCTCTTTGTATTCTAGTGATCAGAATCAGAACACAAGTCACATGTCAGCTACTGCATTGCTGCATAAAGCAGCTCAAATGGAATCTGGGAGGATCAATGGAAACGCTGTTTTCAACAACAATAATAATGTCTTTGGCTTGCTGAGCTCCAATCTCTCAACCAACAACAACAGGAATAGTACTAGTATTGGGGAAATTCAGAAGTTTTTCAAGGAGGAAAATCAAGGTGAAAACTTGAACTACATGAATCAGTCAATTATGGATATGGACAAGCAAGTATTTTCAGGTTCAAATAGTGAAGACTTAACAAGAGATTTTCTTGGAGTTGGAGATGACAGCTCATTGAACAGGCCTTTCTTGCAGCAAGAGTTTGCTGCCAAGTTCAATCCAATGGAACAGGTTGATGTCATGAACCTGCAAGGCCAGTTCAGTGGACATCAATGTAATGAAGAAGTTGTATTAATGTATGATACATAG 1473 0.4223 MMSEEALSSVPSKLLVQPHDHQNSSNPNSNSVKRKRSLPGTPDPDAEVIALSPKSLMATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRTNQEVKKKVYVCPEKSCVHHDPCRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYRCDCGTLFSRKDSFLTHRAFCDALAERSARLTSIPLVLSNFGNDPLMMNAQAVPRNISQSLFGFHHELDGSGPESFMGNFVDYGQKRVSQWNNNPQLHQVLISNSCCTTLPDLVQTTNNNNSMFGSSPEATQWVNCRYPEASSFTTLPHGLKIEPEENKGDLSHSGISSLYSSDQNQNTSHMSATALLHKAAQMESGRINGNAVFNNNNNVFGLLSSNLSTNNNRNSTSIGEIQKFFKEENQGENLNYMNQSIMDMDKQVFSGSNSEDLTRDFLGVGDDSSLNRPFLQQEFAAKFNPMEQVDVMNLQGQFSGHQCNEEVVLMYDT. 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09189 490 ProSitePatterns Zinc finger C2H2 type domain signature. 64 84 IPR013087 -
Seca4g09189 490 SUPERFAMILY beta-beta-alpha zinc fingers 61 158 IPR036236 -
Seca4g09189 490 Gene3D Classic Zinc Finger 116 195 - -
Seca4g09189 490 MobiDBLite consensus disorder prediction 1 47 - -
Seca4g09189 490 FunFam protein indeterminate-domain 5, chloroplastic-like 116 195 - -
Seca4g09189 490 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 21 454 IPR031140 -
Seca4g09189 490 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 84 IPR013087 -
Seca4g09189 490 MobiDBLite consensus disorder prediction 15 36 - -
Seca4g09189 490 Gene3D Classic Zinc Finger 41 113 - -
Seca4g09189 490 FunFam protein indeterminate-domain 12-like 41 109 - -
Seca4g09189 490 SMART c2h2final6 138 158 IPR013087 -
Seca4g09189 490 SMART c2h2final6 62 84 IPR013087 -
Seca4g09189 490 SMART c2h2final6 103 133 IPR013087 -
Seca4g09189 490 Pfam Zinc finger, C2H2 type 62 84 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09189 Seca-Chr4 217919859 217922158 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09189 32 200 IDZ Gene Family AT3G45260 88.235 7.03e-112 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca4g09189 zf-C2H2 0.0074 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09189 K25870 - gmx:100781896 464.536