Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09187 ATGGAGGGAGATCAACAGGGTTGTAATTCTAATTACACCTTTCCACCTGGCTTCAGATTCCACCCCTCTGATGAGGAACTCATTGTTCATTACTTGCAAAACAAAATCAGCTCACGTCCACTTCCAGCTTCTATTATAGCTGAAATTGATCTGTATAAGTATAATCCGTGGGAGTTACCTAATAAGTCTTTGTTTGGGGAGGAAGAGTGGTATTTCTTTAGCCCAAGAGATAGGAAATACCCAAATGGATTAAGGCCAAACAGAGCAGCAGCATCAGGATATTGGAAGGCAACAGGAACTGACAAGCCAATTCTTTCTTCTAGTGGATCAAAGCGCATTGGAGTGAAGAAAGCTCTGGTATTTTATTCAGGTCGACCTCCTAAGGGTGCTAAGACTGACTGGATCATGAATGAATATAGATTGGTTGACACAATCACCAAATCCTCTCAGCTAAAAGGTTCCATGCGGTTGGATGATTGGGTACTATGCCGGGTTCGACATAAAGGCTACTCATCTAAGAATTTATGTGAAAGTCAAGAGAATCCTTGCGAATCAAACTTGCCAGCAAATGTATCAAGGAGTGAAGAATACCCAACAAACCCAAACTTTCAGGCTGACATGATCACGGATTACCAATTCAAAGACTATCAGATCATAGCCTCTATTCTTGTTGGTGGATCTATACCTCCCACTGAGAACATGTCTAGTCTGAGCTTTAAGGGCAGCAAAGGCAATAATCTAGCTTCAATTTATGAAGATGGTTTCAATAAAGTGCATTCTCAAACAACAATTCCTTCTTTGGACAGTTACTTCAACCCACTAAGAAAATCTAATGAGGATGATCATTATGAAAATCTTATTTCTTTTAACAGGAAGTTCAACACTGAGAACAAAATAGACGAATCTCCTAGCAAGGTGTTGACCAGTAGAGAATTGAACTGCTATAACCAAAATCAGTATCAAGTTGACATTTTTAGTGGGAATCCACCAGATCTCATCAAGTTTCAAGAGCTAAACGAAATAACCTTTACAGGAATATACCCTCAGTGA 1050 0.3962 MEGDQQGCNSNYTFPPGFRFHPSDEELIVHYLQNKISSRPLPASIIAEIDLYKYNPWELPNKSLFGEEEWYFFSPRDRKYPNGLRPNRAAASGYWKATGTDKPILSSSGSKRIGVKKALVFYSGRPPKGAKTDWIMNEYRLVDTITKSSQLKGSMRLDDWVLCRVRHKGYSSKNLCESQENPCESNLPANVSRSEEYPTNPNFQADMITDYQFKDYQIIASILVGGSIPPTENMSSLSFKGSKGNNLASIYEDGFNKVHSQTTIPSLDSYFNPLRKSNEDDHYENLISFNRKFNTENKIDESPSKVLTSRELNCYNQNQYQVDIFSGNPPDLIKFQELNEITFTGIYPQ. 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09187 349 SUPERFAMILY NAC domain 12 168 IPR036093 GO:0003677|GO:0006355
Seca4g09187 349 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 261 - -
Seca4g09187 349 Gene3D NAC domain 23 171 IPR036093 GO:0003677|GO:0006355
Seca4g09187 349 ProSiteProfiles NAC domain profile. 14 168 IPR003441 GO:0003677|GO:0006355
Seca4g09187 349 FunFam NAC transcription factor 23 172 - -
Seca4g09187 349 Pfam No apical meristem (NAM) protein 15 141 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09187 Seca-Chr4 217872772 217875060 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09187 8 179 NAC Transcription Factor Family AT1G69490 66.860 1.87e-82 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca4g09187 NAM 2.8e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09187 - - gmx:100817193 597.045