Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09178 ATGGATTTGGTATCCAGTTGCAAGGAAAAATTGACATATTTTCGTATAAAGGAGCTCAAAGATGTGCTCACTCAGTTAGGACTTTCAAAGCAGGGAAAGAAGCAGGATCTTGTTGATAGGATATTATCTGTTCTCTCAGATGAACAAGTTGCGAAAATGTGGGCTAAGAAGAATGCTGTTGGAAAAGAACAGGTGGTAAAATTAGTGGATGACACATATAGAAAATTGCAAATTTCTGGGGCAACTGATCTGGCATCAAAGGGGCAGGGTGCCTCAGACAGCAGTAATGTGAAAATTAAAGGTGAAATTGATGATTCCTTTCAATCAGACACAAAGATTCGCTGTCTCTGTGGAAGATCATTGGAAACAAAGCTATTGATCAAGTGTGAAGATACAACATGCCATGTATCACAGCACATCAACTGCGTTATTATTCCAGAGAAACCTATGGAAGGAATCCCACCAGTTCCTGACAAGTTTTTTTGTGAAATATGTCGCCTCAGTCGAGCAGACCCATTTTGGGTTTCAGTGGCACACCCTTTATTTCCCGTGAAGTTGACTACAACCCATATTCCAACGGACGGAACCAACCCAATGCAGAGTGTTGATAGAACATTTCAACTTACAAGAGCAAACAAGGACTTGATATCAAAATCGGAATTTGAGGTTCAGGCTTGGTGTATGCTTCTGAACGACAAAGTTACATTCAGGATGCAATGGCCACAATATACAGACCTACAGGTCAATGGTGTTCCTGTTCGTGCTATTAACAGACCAGGTTCACAACTTCTTGGGGCTAATGGCCGTGATGATGGTCCAATTATCACGCCATATACAAAAGATGGAATTAATAAGATTTCTTTAACGGGGTGCGATGCTCGTAATTTTTGTTTAGGGGTCCGTATTGTTAAAAGGCGCAGCCTGCATCAGGTAGATTGCGTTCTTAACTTGCTTAATTTCTAA 963 0.4091 MDLVSSCKEKLTYFRIKELKDVLTQLGLSKQGKKQDLVDRILSVLSDEQVAKMWAKKNAVGKEQVVKLVDDTYRKLQISGATDLASKGQGASDSSNVKIKGEIDDSFQSDTKIRCLCGRSLETKLLIKCEDTTCHVSQHINCVIIPEKPMEGIPPVPDKFFCEICRLSRADPFWVSVAHPLFPVKLTTTHIPTDGTNPMQSVDRTFQLTRANKDLISKSEFEVQAWCMLLNDKVTFRMQWPQYTDLQVNGVPVRAINRPGSQLLGANGRDDGPIITPYTKDGINKISLTGCDARNFCLGVRIVKRRSLHQVDCVLNLLNF. 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09178 320 ProSitePatterns Zinc finger PHD-type signature. 115 165 IPR019786 -
Seca4g09178 320 ProSiteProfiles SAP motif profile. 11 45 IPR003034 -
Seca4g09178 320 FunFam E3 SUMO-protein ligase SIZ1 1 66 - -
Seca4g09178 320 SMART sap_9 11 45 IPR003034 -
Seca4g09178 320 PANTHER ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN 9 311 - -
Seca4g09178 320 SUPERFAMILY SAP domain 1 64 IPR036361 -
Seca4g09178 320 Pfam SAP domain 14 42 IPR003034 -
Seca4g09178 320 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 171 IPR013083 -
Seca4g09178 320 SMART PHD_3 114 166 IPR001965 -
Seca4g09178 320 SUPERFAMILY FYVE/PHD zinc finger 107 169 IPR011011 -
Seca4g09178 320 CDD PHD_Bye1p_SIZ1_like 114 165 - -
Seca4g09178 320 Gene3D SAP domain 1 62 IPR036361 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09178 Seca-Chr4 217776576 217782838 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09178 - - ahf:112736540 558.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04041 4 71977808 71988742 Seca4g09178 4 217776576 217782838 PCT