Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09169 ATGTGTATCTTCAAATCCTCTGCAACCCACTTGTCACTTGTTGTATCCCTGTTTGGCTTGCTGAGCTTTGCAATTACAAGTGAAGCAGCTCCAACATACACCTCATCTTTATGCACAGAGGGATCCTATTACCGACCCAACACAACTTTCCAATCCAACCTCAATGCCCTCCTCTCTTCCCTTGTCTCCAACGCCACCCTCCACCACGGATTCTACAGCACCAACATCTCCCTCGGAACCCCTTACCAACTGAAAGGACTTTTCCTCTGCCGCGGTGACGTCACCCCCTCCGTCTGCCAACACTGTGTCTCCGCCGCAGCCAACAACATCATACCTCACTGCCCCAACCAAACAGAGTCTATAATCTGGTACGACGAGTGCATGCTGCGTTACTCCAACAATTCCTTCAACAACTTAGTCCCATCAACGGACTCGATGGCCGTTGAGAGGGTCTCTGATTCAGAGTCATACCTTGCGCGGTTCAATGAATTTCTCGCAGCCACGTTGAATGATGTAGCACAAGAAGCCCTTAATTCTCCTTCTGATAAGAATTTCGCTACAAAAGAAGCGAATTTCACGAGCTCAATGACGCTTTATACCCTGGTGCAGTGCACACCCGATTTATCCACCTTTGAGTGTAACACGTGTTTCCGAAGCGCCATAGGTGCCCTTCCAGCATGCTGTGATGGGAAACGAGGTGCAAGGTCCCTGCTTCCGGGTTGTAATGTCAGATATGAATTGTACCCGTTTTACAATGTCTCAATTCAACCTCATTTTCCCTCTCCTTCTTTGGGTATCAAAAGTAAGTATATTAAAACTTATGCAGGAAAAAGCAGTATCTCTGTAATTGTTGCGATTGTTGTCCCAATTGTTGTTGCCATGGCACTTTTCATTCTCGGTTTCTGCTTCCTGCGTAAGAGGGCAAGCGACAAGTATAATACATTCAACCAGGATTCAATTGGGGAGGATTTTACAGATGTGGACACTTTGCAATTTGACTTGGCTACAGTTGAAGCTGCCACTAACAGCTTCTCGGATGAGAACAAGATTGGCCAAGGTGGATTTGGTGCGGTTTATAAGGGTATCCTCCCTAGCGGACAGAGGATAGCCGTGAAGAGATCGTCAGTAAACTCCTTGCAGGGTACAGTAGAGTTCAGGAATGAAGCTACCCTTGTGGCCAAGCTTCATCATAGAAATGTAGTGAGGCTATTGGGATTTTACTTGGAGGGGCAGGAGAAGATGCTTGTCTATGAATACATACCAAACAAAAGCCTTGATCACTTTCTATTTGATCCTGTAAAGCAAAGAGAGTTAGATTGGTCAAGACGCTACAAGATTATAGTTGGCATTGCTCGAGGAATTCTTTATCTTCATGAAGATTCCCAACTTACAATTATACATCGTGATCTCAAAGCTAGCAATGTTCTACTAGATGAAAATATGAAGCCAAAGATTTCAGATTTTGGCATGGCCAAAATTTTCCAGGCAGATCAGACGCAAGTAAATACAAGAAGGATAGTTGGGACTTATGGTTACATGTCTCCAGAATATACAATACGTGGACAGTACTCTGTGAAATCAGATGTATTCAGCTTTGGTGTCCTAGTTTTGGAGATTGTGAGTGGCAAGAAGAATGCTAATTTTCATCAATTGAATCATACTGGTGACCTCTTAAACTATGCTTGGAAAAATTGGACAGAGCAAACACCTTTGGAATTGCTGGATCCAACACTTAGAGGTTCTTATTCAAGAAATGAAGTCATCAGATGCATCCACATTGGTTTATTGTGTGTTCAGGAAAATCCATCTGACAGGCCTTCTATGGCAACTATTGCACTTATGCTAAACAGTTATTCAGTTACCTTGTCATTACCACGACAGCCAGCATCTTTCCTGCATGGAAGAACACCTAACAGCCTAACAGGCTAA 1929 0.4391 MCIFKSSATHLSLVVSLFGLLSFAITSEAAPTYTSSLCTEGSYYRPNTTFQSNLNALLSSLVSNATLHHGFYSTNISLGTPYQLKGLFLCRGDVTPSVCQHCVSAAANNIIPHCPNQTESIIWYDECMLRYSNNSFNNLVPSTDSMAVERVSDSESYLARFNEFLAATLNDVAQEALNSPSDKNFATKEANFTSSMTLYTLVQCTPDLSTFECNTCFRSAIGALPACCDGKRGARSLLPGCNVRYELYPFYNVSIQPHFPSPSLGIKSKYIKTYAGKSSISVIVAIVVPIVVAMALFILGFCFLRKRASDKYNTFNQDSIGEDFTDVDTLQFDLATVEAATNSFSDENKIGQGGFGAVYKGILPSGQRIAVKRSSVNSLQGTVEFRNEATLVAKLHHRNVVRLLGFYLEGQEKMLVYEYIPNKSLDHFLFDPVKQRELDWSRRYKIIVGIARGILYLHEDSQLTIIHRDLKASNVLLDENMKPKISDFGMAKIFQADQTQVNTRRIVGTYGYMSPEYTIRGQYSVKSDVFSFGVLVLEIVSGKKNANFHQLNHTGDLLNYAWKNWTEQTPLELLDPTLRGSYSRNEVIRCIHIGLLCVQENPSDRPSMATIALMLNSYSVTLSLPRQPASFLHGRTPNSLTG. 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09169 642 FunFam Cysteine-rich receptor-like protein kinase 10 144 250 - -
Seca4g09169 642 ProSiteProfiles Gnk2-homologous domain profile. 32 136 IPR002902 -
Seca4g09169 642 Pfam Salt stress response/antifungal 159 248 IPR002902 -
Seca4g09169 642 Pfam Salt stress response/antifungal 38 133 IPR002902 -
Seca4g09169 642 FunFam Cysteine-rich receptor-like protein kinase 10 305 419 - -
Seca4g09169 642 ProSiteProfiles Gnk2-homologous domain profile. 143 250 IPR002902 -
Seca4g09169 642 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 31 136 - -
Seca4g09169 642 CDD STKc_IRAK 350 616 - -
Seca4g09169 642 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 29 631 - -
Seca4g09169 642 ProSitePatterns Protein kinases ATP-binding region signature. 350 372 IPR017441 GO:0005524
Seca4g09169 642 ProSiteProfiles Protein kinase domain profile. 344 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g09169 642 Pfam Protein tyrosine and serine/threonine kinase 347 612 IPR001245 GO:0004672|GO:0006468
Seca4g09169 642 FunFam cysteine-rich receptor-like protein kinase 10 420 622 - -
Seca4g09169 642 Gene3D - 146 250 IPR038408 -
Seca4g09169 642 Gene3D - 30 136 IPR038408 -
Seca4g09169 642 SMART serkin_6 344 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g09169 642 ProSitePatterns Serine/Threonine protein kinases active-site signature. 465 477 IPR008271 GO:0004672|GO:0006468
Seca4g09169 642 Gene3D Phosphorylase Kinase; domain 1 306 419 - -
Seca4g09169 642 SUPERFAMILY Protein kinase-like (PK-like) 330 631 IPR011009 -
Seca4g09169 642 Gene3D Transferase(Phosphotransferase) domain 1 420 624 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09169 Seca-Chr4 217602889 217607220 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09169 4 639 Receptor kinase-like Gene Family AT4G05200 49.771 0.0 638
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g09169 PK_Tyr_Ser-Thr 3.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09169 - - gmx:547727 929.087