Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09167 ATGGAGAATGACACAAACACCCCTACTTCCTCTCCCCCATTTTCTCACTCTTCTTCTACTACTCCTTCTCCATCTTCCCCTCCACAACCACAAGTTATCATGAGCCCCTGTGCTGCTTGCAAGATTTTAAGGCGAAGATGTGCAGAGAAATGTGTGTTGGCACCGTATTTCCCTCCCACTGAACCTGCCAAGTTTACCATTGCACACCGTGTCTTCGGTGCCAGCAACATCATCAAGTTCTTACAGGAACTTCCAGAGTCTCAAAGAGCTGATGCAGTGAGCAGCATGGTTTATGAGGCTGGTGCAAGAATAAGAGACCCTGTCTATGGATGTGCAGGTGCAATTTGCCAGCTCCAAAAGCAGGTCAATGAGCTTCAAGCACAATTAGCAAAGGCACAAGCTGAGATTGTAAACATGCAATTCCAACAAACCAATCTTGTGGCTCTAATTTGCATGGAAGTGGCAAAAACTCCACGGGATCAATCACCACAACAATCAGTGGAGAACTTCATTTCAAGTCCTCCCCATAGCAGTGGCTATCAAAACAATCTCAACTTCTTTGAGGAGAACACCAGCCTAAACTCTTTGTGGGAGCCTCTTTGGACATGA 609 0.4614 MENDTNTPTSSPPFSHSSSTTPSPSSPPQPQVIMSPCAACKILRRRCAEKCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEAGARIRDPVYGCAGAICQLQKQVNELQAQLAKAQAEIVNMQFQQTNLVALICMEVAKTPRDQSPQQSVENFISSPPHSSGYQNNLNFFEENTSLNSLWEPLWT. 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09167 202 ProSiteProfiles LOB domain profile. 35 136 IPR004883 -
Seca4g09167 202 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 35 161 - -
Seca4g09167 202 Pfam Lateral organ boundaries (LOB) domain 36 133 IPR004883 -
Seca4g09167 202 MobiDBLite consensus disorder prediction 1 22 - -
Seca4g09167 202 MobiDBLite consensus disorder prediction 1 30 - -
Seca4g09167 202 Coils Coil 115 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09167 Seca-Chr4 217572764 217574991 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09167 31 202 AS2 family AT1G07900 67.429 2.33e-80 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca4g09167 LOB 2.5e-41 No_clan