Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09160 ATGTTTTCCGAGAAAATGGAACAGTTCATAGACAACTTGCCGCCGATGGATCTGATGCGATCCGAGAAGATGTCATTCGTTCAACTCATCATCCCCGCCGAGTCCGCTCACCGAGCCATCTCCTATTTGGGCGAACTCGGCCTCCTCCAATTTCGAGACTTAAATGCTGATAAAAGCCCTTTCCAGAGAACATTTGTTAATCAGGTAAAGCGATGTGCGGAAATGTCAAGAAAGCTGCGATTCTTCAAGGATCAAATCAATAAAGCTGGTCTAATGTCTTCTTCTCTCACTGTATTGCAACCAGATGTTGACTTGGAGGATTTAGAGATACAACTTGCTGAGCATGAACATGAGCTAATTGAAATGAACTCTAACAGTGACAAACTTCGGCAATCATATAATGAACTCCTGGAATTCAAGATTGTATTACAGAAGGCATGTGGTTTTCTTGTTTCAAGTCATGGCCGTGCTGTTCCAGATGAGAGAGAACTACAAGAGAATGTATACTCAAATGATGACTATGTTGACACATCATCTTTGCTTGAACAGGAAATGAGGTCTCAACCATCATATACGTCTGGTTTAAGATTTATCAGTGGGATAATTTGTAAATCCAAGGTTCTTAGGTTTGAAAGGATGTTGTTTCGTGCTACAAGAGGCAATATGCTTTTCAATCAGGCACCAGCTGGTGAACAAATCATGGATCCTGTTTCAATTGAGATGGTTTTCTTCTTTCTGATTACTTTTAAGAAGATTGATAATTTGGCACTTTTCCCCCTTTTAATCTGTATTTATCATTTTGACCTATTGTGTTCCCAGTTAGTGTATATTCCTATTGTTGTATTCTTTGACAATGACTCAGACTCTTGTAATTTTCTTTTGCAGATTGAGAAAACAGTGTTTGTTGTGTTTTTCTCTGGGGAACAGGCAAGAACAAAAATTCTGAAAATTTGTGAGGCATTTGGTGCCAATTGTTATCCTGTTCCTGAAGATATAAGTAAGCAGAGGCAGATAACTAGGGAGGTTTCATCACGTCTTACTGACTTAGAAGCAACTTTGGATGCTGGGATTAGGCACCGGAACAAGGCTCTAGCTTCTGTCGCAGACCATCTAGCAAAATGGATGAACCTGGTAAGAAGAGAGAAGGCCGTGTATGATACACTGAACATGTTAAATTTTGATGTCACAAAAAAATGTCTTGTTGGAGAGGGCTGGTGCCCTATGTTTGCAAAAACACAGATGCAGGAGGCACTGCAACGTGCAACTTTTGATAGCAATTCTCAAGTTGGTATAATCTTCCATCCAATGGATGCAGTGGAATCACCTCCTACATATTTTAGGACCAATACTTTCACAAATCCATATCAGGAAATTGTTGATGCATATGGTGTTGCAAGATACCAAGAAGCAAACCCTGCAGTTTACACAACTGTTATATTCCCCTTCCTATTTGCCTTGATGTTTGGGGACTGGGGTCATGGAATTTGCCTGTTGCTGGGAGCATTAATTCTTATAGCACGTGAAAACAAACTCAGCACGCAGAAACTTGGAAGCTTTATGGAGATGCTATTTGGTGGACGCTATGTGATTCTTTTGATGGCACTATTTTCAATCTATTGTGGGTTAATCTACAATGAATTCTTTTCTGTTCCTTTTCACATATTTGGTGAGTCAGCTTATCGATGCCGCGATAATTCATGCAGGGATGCACATACTATTGGCTTAGTCAAAGTCCGAGATCCATACCCATTTGGTGTGGATCCCAGCTGGCGTGGAAGTCGATCGGAATTGTCTTTTCTGAACTCTATGAAGATGAAGATGTCTATTCTGTTTGGTGTGGCACATATGAACTTAGGAATTATATTAAGTTATTTCAATGCTCGTTTCTTTGGAAGCTCACTGGATATAAGGTGTCTCACTCTTCTGCCTGGCCTATACCAGTTTGTGCCACAGATGATTTTCCTTAATAGTCTATTTGGGTATCTTTCGCTTCTCATTGTTGTCAAGTGGTGTACTGGCTCTCAAGCAGACCTTTATCATGTAATGATATATATGTTTTTAAGCCCCACAGACAATCTTGGAGAGAATCAGTTGTTCTGGGGCCAAAGACCACTTCAAATTGTGCTTTTGCTTTTGGCTGTAATTGCAGTTCCATGGATGCTCTTTCCAAAACCTTTTATGCTGAAGAAGCTTCATACTGAGGTGCCACTTTTAACTGCCTTGTGTATGATTTTTTTGCTAGAAAGTTTGTGTTTGGGTGAGCGTTTGCAAACTTGA 2277 0.4018 MFSEKMEQFIDNLPPMDLMRSEKMSFVQLIIPAESAHRAISYLGELGLLQFRDLNADKSPFQRTFVNQVKRCAEMSRKLRFFKDQINKAGLMSSSLTVLQPDVDLEDLEIQLAEHEHELIEMNSNSDKLRQSYNELLEFKIVLQKACGFLVSSHGRAVPDERELQENVYSNDDYVDTSSLLEQEMRSQPSYTSGLRFISGIICKSKVLRFERMLFRATRGNMLFNQAPAGEQIMDPVSIEMVFFFLITFKKIDNLALFPLLICIYHFDLLCSQLVYIPIVVFFDNDSDSCNFLLQIEKTVFVVFFSGEQARTKILKICEAFGANCYPVPEDISKQRQITREVSSRLTDLEATLDAGIRHRNKALASVADHLAKWMNLVRREKAVYDTLNMLNFDVTKKCLVGEGWCPMFAKTQMQEALQRATFDSNSQVGIIFHPMDAVESPPTYFRTNTFTNPYQEIVDAYGVARYQEANPAVYTTVIFPFLFALMFGDWGHGICLLLGALILIARENKLSTQKLGSFMEMLFGGRYVILLMALFSIYCGLIYNEFFSVPFHIFGESAYRCRDNSCRDAHTIGLVKVRDPYPFGVDPSWRGSRSELSFLNSMKMKMSILFGVAHMNLGIILSYFNARFFGSSLDIRCLTLLPGLYQFVPQMIFLNSLFGYLSLLIVVKWCTGSQADLYHVMIYMFLSPTDNLGENQLFWGQRPLQIVLLLLAVIAVPWMLFPKPFMLKKLHTEVPLLTALCMIFLLESLCLGERLQT. 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09160 758 Coils Coil 105 132 - -
Seca4g09160 758 PANTHER VACUOLAR PROTON ATPASES 18 732 IPR002490 GO:0033179|GO:0046961|GO:1902600
Seca4g09160 758 Pfam V-type ATPase 116kDa subunit family 42 733 IPR002490 GO:0033179|GO:0046961|GO:1902600
Seca4g09160 758 PIRSF ATP6V0A1 14 737 IPR026028 GO:0000220|GO:0046961
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09160 Seca-Chr4 217417823 217428427 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09160 16 732 Primary Pumps ATPases(2) AT4G39080 57.043 0.0 815
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09160 K02154 - gmx:100793301 1152.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g09160 4 217417823 217428427 Seca4g09160 4 217417823 217428427 ECH
Seca4g09160 4 217417823 217428427 Seca4g09160 4 217417823 217428427 PCT