Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09150 ATGTTAGATCTTAATCTGAATGCCGACTCGACTCAGAACGATGACTCGCTCGTGCCGGTGGATAAGTTTCCCGAAGTTTCTTCGGGAACCTCCAATTCCTCCATCGTGAATGCGGAGGGGTCAAGCAACGAGGACTCGTGCTCCACACGCGCCGGCGGCAACGTCTTCACCTTCAATTTCGGTATCCTTAAGGTGGAAGGAAGGAACGACGTCGTCGCGACCAAGGAGCTGTTCCCGGTGAGTGCCGGCAATTGGCAGGGACAGCAGCCTTCGACGTCGTCGTTTCTGGCAAGGAAGAGCTTGGTGGATCTCTCGCTGGATCATCAAAACGGCGAGATGAAGGTGGTTCAGGTTCAGCCACAGCCACAGCCACAGCCACAGCCTCAGGTCAAGAAGAGCAGGAGGGGACCAAGGTCTCGGAGCTCTCAGTACAGAGGAGTCACCTTCTACAGGAGGACTGGAAGATGGGAATCGCATATCTGGGATTGCGGGAAACAAGTCTATTTGGCGTCCTTTGATGAAATTGGTATGGGCCTTGTAGGTGGATTTGACACCGCTCATGCCGCCGCTAGAGCCTATGATCGAGCTGCTATCAAGTTCAGGGGACTTGATGCTGACATCAATTTCAATCTCGTTGATTACGAGGACGATCTGAAACAGATGAAGAATCTTTCCAAGGAGGAATTCGTGCACATACTACGCCGCCACAGTACCGGTTTCTCAAGGGGGAGCTCAAAATACAGAGGAGTGACACTTCACAAATGTGGCCGTTGGGAAGCTCGAATGGGACAATTCCTTGGCAAAAAGTATATATATCTTGGGCTATTCGACAGCGAAGTAGAAGCTGCAAGGGCTTATGACAAGGCAGCTATCAAGTGCAATGGAAGAGAAGCAGTGACTAACTTTGAGCCAAGTACATATGAAAGCGAGATGAAACCGGAAGCTATTAATGAAGGTGGCAGTCACAATCTTGACCTCAATTTGGGTATGGCAACCCCAGGACACGGTCCCAACGAAAACAGGGGGCATCTTCAGTTCCTACCTGTCCTGCATCCTGGAAGAAGTTCAAGGATTTATGTCTTAATTAATGGTCATGATAGGGTTGGTTCACTTTATTTTCAGATGGAGACCAATGTTAATTCAGTTATTGGTGATCCGTCTTTGAAAAGGCTGGTTGCAACTGAAGAACGTCCTTCTGTATGGAATGCCACATATTCCAGTTTCTTTCCCAATGAGGAAAGAGCAGAGAGAATCGGCATAGATCCTTCAAAAGGACTCCGCAACTGGGCGTGGCAAACGCATGGGCAAGTCTCTGCAACCCCAGTACCACCGTTCTCTACTGCAGCATCATCAGGATTCTCAATTTCAGCTACCTTTCCATCGACTGCGTCTGCCATATTTCCAACAAAGTCTATGAACTCAGGTCCTCAGAGCCTCTGTTTCACCTCATCCAGCGTACCTGGTAGCAATGCAGCTCAATACTACTATCAGATGAAGTCCCCGCAGGCACCACCCTAG 1518 0.4947 MLDLNLNADSTQNDDSLVPVDKFPEVSSGTSNSSIVNAEGSSNEDSCSTRAGGNVFTFNFGILKVEGRNDVVATKELFPVSAGNWQGQQPSTSSFLARKSLVDLSLDHQNGEMKVVQVQPQPQPQPQPQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLASFDEIGMGLVGGFDTAHAAARAYDRAAIKFRGLDADINFNLVDYEDDLKQMKNLSKEEFVHILRRHSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYESEMKPEAINEGGSHNLDLNLGMATPGHGPNENRGHLQFLPVLHPGRSSRIYVLINGHDRVGSLYFQMETNVNSVIGDPSLKRLVATEERPSVWNATYSSFFPNEERAERIGIDPSKGLRNWAWQTHGQVSATPVPPFSTAASSGFSISATFPSTASAIFPTKSMNSGPQSLCFTSSSVPGSNAAQYYYQMKSPQAPP. 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09150 505 ProSiteProfiles AP2/ERF domain profile. 143 210 IPR001471 GO:0003700|GO:0006355
Seca4g09150 505 PRINTS Ethylene responsive element binding protein signature 285 305 IPR001471 GO:0003700|GO:0006355
Seca4g09150 505 PRINTS Ethylene responsive element binding protein signature 247 258 IPR001471 GO:0003700|GO:0006355
Seca4g09150 505 SUPERFAMILY DNA-binding domain 142 210 IPR016177 GO:0003677
Seca4g09150 505 Pfam AP2 domain 245 295 IPR001471 GO:0003700|GO:0006355
Seca4g09150 505 MobiDBLite consensus disorder prediction 1 49 - -
Seca4g09150 505 MobiDBLite consensus disorder prediction 1 17 - -
Seca4g09150 505 FunFam AP2-like ethylene-responsive transcription factor 245 305 - -
Seca4g09150 505 Gene3D AP2/ERF domain 142 176 IPR036955 GO:0003700|GO:0006355
Seca4g09150 505 Gene3D AP2/ERF domain 245 304 IPR036955 GO:0003700|GO:0006355
Seca4g09150 505 Gene3D AP2/ERF domain 177 212 IPR036955 GO:0003700|GO:0006355
Seca4g09150 505 SMART rav1_2 246 309 IPR001471 GO:0003700|GO:0006355
Seca4g09150 505 SMART rav1_2 143 216 IPR001471 GO:0003700|GO:0006355
Seca4g09150 505 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 110 329 - -
Seca4g09150 505 MobiDBLite consensus disorder prediction 117 144 - -
Seca4g09150 505 ProSiteProfiles AP2/ERF domain profile. 246 303 IPR001471 GO:0003700|GO:0006355
Seca4g09150 505 MobiDBLite consensus disorder prediction 25 49 - -
Seca4g09150 505 CDD AP2 245 305 IPR001471 GO:0003700|GO:0006355
Seca4g09150 505 SUPERFAMILY DNA-binding domain 245 304 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09150 Seca-Chr4 217129053 217133728 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09150 69 329 AP2-EREBP Transcription Factor Family AT4G36920 64.794 1.25e-93 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Seca4g09150 AP2 3e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09150 K09284 - gmx:100777102 764.222