Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09139 ATGAGTTGCTTTCCTTGCATAGGCAAATCACGAGAAAAAACGGATAGCAAACACCATAGCCATACCAAGAATCTCACTTCTGCTGGTAACGTCAAAGTTGATTTGAAGGTGAATGGTAATGGTAAAAGAGAAGATAATTCTAAACAGGATCAGCTTTCTCTGGACGTGAAGAATTTGAATTTAAAAGAGGAGGCTTCTTCCAAGGATGGAAAAGCTAACGGTTACCGGGCAAAAACATTTACTTTTGATGAGCTTGCATTTGCAACAGGGAATTTTAGGTCAGATTGCTTTTTGGGTGAAGGAGGATTTGGCAAGGTCTATAAGGGTTACATAGATAAAATTAATCAGGCTGCAGCAATAAAACAACTCAACCCTCATGGGCTTCAAGGAATTAGGGAATTTGTTGTTGAAGTGTTGACATTGAGTTTGGCTGACCATCCAAATCTGGTTAAGTTAATTGGGTTTTGTGCTGAGGGAGATCAGAGGCTATTGGTTTATGAGTACATGCCTTTGGGATCATTGGAGAACCATTTGCATGATATTTTGCCTGGAAGAAAAGCACTGGATTGGAATACAAGAATGAAAATAGCTGCTGGTGCAGCTAGAGGTTTGGAGTATTTGCATGATAAAATGAAGCCTCCTGTTATATACCGTGACCTCAAATGCTCCAACATTCTGTTAGGCGAGGATTACTTTCCAAAGTTATCCGATTTTGGCTTGGCAAAAGTAGGGCCTATTGGTGATAAGACCCATGTTTCAACTAGAGTTATGGGCACTTATGGGTACTGTGCTCCAGATTATGCAATGACGGGTCAATTGACATTCAAGTCTGATGTTTATAGCTTTGGGGTTGTTCTTTTGGAGTTAATTACAGGCAGGAAAGCCATCGATCATGCAAAATCTGCTAAAGAACAAAATTTAGTTGCTTGGATTGATGATGATGAAGAGAAGTTTCCATTTTGA 963 0.3967 MSCFPCIGKSREKTDSKHHSHTKNLTSAGNVKVDLKVNGNGKREDNSKQDQLSLDVKNLNLKEEASSKDGKANGYRAKTFTFDELAFATGNFRSDCFLGEGGFGKVYKGYIDKINQAAAIKQLNPHGLQGIREFVVEVLTLSLADHPNLVKLIGFCAEGDQRLLVYEYMPLGSLENHLHDILPGRKALDWNTRMKIAAGAARGLEYLHDKMKPPVIYRDLKCSNILLGEDYFPKLSDFGLAKVGPIGDKTHVSTRVMGTYGYCAPDYAMTGQLTFKSDVYSFGVVLLELITGRKAIDHAKSAKEQNLVAWIDDDEEKFPF. 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09139 320 ProSitePatterns Protein kinases ATP-binding region signature. 98 121 IPR017441 GO:0005524
Seca4g09139 320 ProSitePatterns Serine/Threonine protein kinases active-site signature. 215 227 IPR008271 GO:0004672|GO:0006468
Seca4g09139 320 SMART serkin_6 92 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g09139 320 FunFam probable serine/threonine-protein kinase RLCKVII 63 168 - -
Seca4g09139 320 Gene3D Phosphorylase Kinase; domain 1 61 168 - -
Seca4g09139 320 FunFam Serine/threonine-protein kinase PBS1 169 319 - -
Seca4g09139 320 Pfam Protein kinase domain 97 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g09139 320 Gene3D Transferase(Phosphotransferase) domain 1 169 319 - -
Seca4g09139 320 ProSiteProfiles Protein kinase domain profile. 92 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g09139 320 PANTHER OS07G0668900 PROTEIN 3 311 - -
Seca4g09139 320 SUPERFAMILY Protein kinase-like (PK-like) 78 304 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09139 Seca-Chr4 216919380 216923271 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09139 1 319 Glycoside Hydrolase AT3G07070 54.799 3.32e-116 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Seca4g09139 Pkinase 1.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09139 - - gmx:100794680 503.442