Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09137 ATGGAGGAGCCAAAGAAATCATCACTGAGAACATCATTTCCCAGAGACCCTCGTGGGTCCCTTGAAGTGTTCAACCCAACAAGCTCCAACTCATCGGCGTTGCGCTCTCCTCAGCCTCTCTGGAAAACGTGGACAGAGTCAACAGAAGAACAACAACCACACAACAACCCTTCCTCCGATGAGGTCACCAACACCTCCTGGATGGCTCTCAAGGAGGAATGCGGCACGGCGGCGCAGAGAGCCGCCGAGTGGGGTTTAGTCCTCAAAACAGACACCGAGACCGGAAAGCCACAAGGCGTTGCTGTTCGCAACTCCGGCGGCGAGGAACCGAACAATGCTAAACTCACCACCGCTTCTTCTTCTTCCAGAAGAAACTCCAACAACTCAGCCAGAACCTCCGGCGACTCTTCCGACGGCTCCGATTCCCGCGGGATTCCGAGAGTTTCAGAGGATTTGAAGGACGCTCTGTCTACGTTTCAACAAACTTTCGTCGTTTCGGATGCTACCAAACCCGATTACCCGATTATGTATGCCAGTGCCGGATTCTTTAAGTTGACGGGTTATACATCCAAAGAAGTCATAGGGAGGAATTGTCGGTTTTTACAGGGTGCGGATACGGATCCGGAGGACGTGGCAAAGATAAGGGAGGCGTTAGAAGCAGGGAAAAGTTACTGTGGGAGGATACTGAATTACAAAAAGGATGGGACATCCTTCTGGAACCTTCTAACTATTTCACCTATCAAAGACGACGATGGCAAAGTGCTCAAATTCATTGGACTTTTGGGTGTGGGTAAAGATTATAAGCTTTGCATTGATTGCATGTGGACCTTGATGTACTGGAAAGAAAGCAAAGCTTACCCTATGTCTTTTATTTCTCGTCAGAAAGAGAAGGCTACAAATTCAGTAACTGAGTTGCTACAGGCCGTGAAGCGTCCCCGAGCATTCAGTGAATCAGCAAACCGTCCCATGATTAGAGAATCAGGAGTTGCTGAAGAAGAAGAAGAAGAAGAAGCAGAGGAAGAAGAGAAAATATCAAGGAGAAAATCTGAGAGTGTGGCTTCCTTTAGACGGAAATCACAAGGAAGAAATAGAAGTTCAATGGAGCGAATCAGTGAGCTACCTGAAAATAAACAGAAAACCTCTAGTCGCCGTTCTTTCATGGGGTTCATCAAGAAAAATCAATCCATTGATGAAAGCGAAAATGATGAAGTTATTGAGGACATCAGCTCTGAGAGTGAGGATGATGAGAGGCCTGATAGTTTTGAATTTGATGATAAAGAAAAACTGAGGGAAAAGAGAAAAGGTCTTGATCTTGCTACCACACTTGAGCGTATTGAGAAAAACTTTGTCATTACTGATCCAAGGCTTCCTGACAATCCTATAATCTTTGCATCTGATAGCTTCTTAGAGCTTACAGAATACAGTCGTGAAGAAATCTTGGGAAGAAATTGCAGGTTTCTGCAAGGACCTGAAACTGATCCAGAAACTGTGAGAAAAATTAGAGTGGCAATTGACAACCAAACAGAAGTTACAGTGCAACTTATTAATTATACAAAGAGTGGTAAAAAGTTCTGGAACCTGTTTCATTTGCAACCTATGCGTGATCAGAAGGGAGAAGTACAATATTTTATTGGTGTTCAACTTGATGGTAGTCAACATATAGAGCCTCTTAACAACTGCATCGCTGAAGATACTGCAAAGGAGGGAGAACAATTGGTCAAACAAACTGCAGAAAATGTTGATGAGGCAGTGAGAGAACTTCCCGATGCTAATCTGAAACCAGATGATTTATGGAGAAATCATTCAAAAGTGGTTCACCCCAAACCTCATAGGAAGAATGATGATGCTTGGATAGCTATCCAAAAGATCATAGAAAGCGGAGAACAGATAGGCCTAGAGCACTTTAGGCCAATCAAACCTTTGGGGTCAGGGGATACTGGCAGTGTGCATCTGGTAGAGCTAAGTGGAACTGGTCAATATTTTGCCATGAAGGCTATGGATAAGGGTGTTATGCTCAATCGTAACAAGACTACAACACATATTTGTTTGATAACCGATTACTGTCCTGGTGGAGAGCTATTCCTGATTCTTGACCGGCAGCCAGCAAAGGTTCTCAAGGAAGACGCCGTGAGATTTTACGCTGCTGAGGTAGTGATTGCATTGGAATACCTTCATTGTCAAGGGATAATATATCGGGATTTGAAGCCAGAAAATGTGTTAATCCAGAGCAGTGGGCATGTGTCTCTAACAGATTTTGATTTGTCAATTTTAACAGCTTGCAAGCCACAGCTTATAGTTCCAGCTACAAATGAAAAGAAGAAGAAAAAGAAGAAACAAAATAAAGGTCAGCAGGTTCCAATGTTTATGGCTGAACCTATAAGAGCATCAAATTCTTTTGTTGGCACAGAAGAGTACATAGCTCCGGGTGGGGGTGGGATCTTGGTAGCTATACAGTATATATACAGAGAATTTTATTGCATTGATGCTATTAAAACTTCTTCGGAAATGTTCATGCATTTCTCAGAATCTGTTGTAATGACAGTTCAACTTGTGCAGGAAATTATAACTGGTTCAGGCCATACTAGTGCTGTAGATTGGTGGGCTCTAGGTATTCTTCTATATGAAATGCTTTATGGGTATACGCCATTCAGGGGAAAGACAAGACAAAAAACATTTGCAAATATTCTTCACAAAGATCTTAAATTTCCCAAAAGCAAACCGGTAAGTCTCCATGCAAAGCAGCTAATTTACTGGTTGCTGCAAAGAGATCCCAAGACCAGATTGGGTTCCAAGGAAGGAGCAAATGAAATTAAGCGTCATCCATTCTTCCGGGGTGTCAATTGGGCACTAGTTCGTAGCATGAAACCTCCTGAGCTTGATGCTCCTCTCTTACTGGAAACTGAAGAAGAAAAAGAAGCCAAAGATGTAGACCCCGGGCTAGAGGATTTACAGAGCAATATTTTCTGA 2967 0.4317 MEEPKKSSLRTSFPRDPRGSLEVFNPTSSNSSALRSPQPLWKTWTESTEEQQPHNNPSSDEVTNTSWMALKEECGTAAQRAAEWGLVLKTDTETGKPQGVAVRNSGGEEPNNAKLTTASSSSRRNSNNSARTSGDSSDGSDSRGIPRVSEDLKDALSTFQQTFVVSDATKPDYPIMYASAGFFKLTGYTSKEVIGRNCRFLQGADTDPEDVAKIREALEAGKSYCGRILNYKKDGTSFWNLLTISPIKDDDGKVLKFIGLLGVGKDYKLCIDCMWTLMYWKESKAYPMSFISRQKEKATNSVTELLQAVKRPRAFSESANRPMIRESGVAEEEEEEEAEEEEKISRRKSESVASFRRKSQGRNRSSMERISELPENKQKTSSRRSFMGFIKKNQSIDESENDEVIEDISSESEDDERPDSFEFDDKEKLREKRKGLDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPETVRKIRVAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSQHIEPLNNCIAEDTAKEGEQLVKQTAENVDEAVRELPDANLKPDDLWRNHSKVVHPKPHRKNDDAWIAIQKIIESGEQIGLEHFRPIKPLGSGDTGSVHLVELSGTGQYFAMKAMDKGVMLNRNKTTTHICLITDYCPGGELFLILDRQPAKVLKEDAVRFYAAEVVIALEYLHCQGIIYRDLKPENVLIQSSGHVSLTDFDLSILTACKPQLIVPATNEKKKKKKKQNKGQQVPMFMAEPIRASNSFVGTEEYIAPGGGGILVAIQYIYREFYCIDAIKTSSEMFMHFSESVVMTVQLVQEIITGSGHTSAVDWWALGILLYEMLYGYTPFRGKTRQKTFANILHKDLKFPKSKPVSLHAKQLIYWLLQRDPKTRLGSKEGANEIKRHPFFRGVNWALVRSMKPPELDAPLLLETEEEKEAKDVDPGLEDLQSNIF. 989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09137 988 ProSiteProfiles PAS repeat profile. 434 507 IPR000014 -
Seca4g09137 988 Coils Coil 330 350 - -
Seca4g09137 988 MobiDBLite consensus disorder prediction 89 147 - -
Seca4g09137 988 ProSiteProfiles Protein kinase domain profile. 635 943 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g09137 988 ProSiteProfiles PAC domain profile. 508 562 IPR000700 -
Seca4g09137 988 MobiDBLite consensus disorder prediction 22 70 - -
Seca4g09137 988 SMART pas_2 150 219 IPR000014 -
Seca4g09137 988 SMART pas_2 436 505 IPR000014 -
Seca4g09137 988 Gene3D PAS domain 423 587 - -
Seca4g09137 988 SMART pac_2 511 553 IPR001610 -
Seca4g09137 988 SMART pac_2 225 267 IPR001610 -
Seca4g09137 988 MobiDBLite consensus disorder prediction 400 420 - -
Seca4g09137 988 SUPERFAMILY Protein kinase-like (PK-like) 628 957 IPR011009 -
Seca4g09137 988 MobiDBLite consensus disorder prediction 1 71 - -
Seca4g09137 988 MobiDBLite consensus disorder prediction 380 394 - -
Seca4g09137 988 Gene3D Transferase(Phosphotransferase) domain 1 688 808 - -
Seca4g09137 988 ProSiteProfiles PAS repeat profile. 148 219 IPR000014 -
Seca4g09137 988 Gene3D Phosphorylase Kinase; domain 1 623 675 - -
Seca4g09137 988 NCBIfam PAS domain S-box protein 459 549 IPR000014 -
Seca4g09137 988 NCBIfam PAS domain S-box protein 175 259 IPR000014 -
Seca4g09137 988 CDD STKc_phototropin_like 634 962 - -
Seca4g09137 988 FunFam LOV domain-containing protein 423 587 - -
Seca4g09137 988 Pfam PAS domain 457 549 IPR000014 -
Seca4g09137 988 Pfam PAS domain 169 260 IPR000014 -
Seca4g09137 988 Gene3D PAS domain 162 267 - -
Seca4g09137 988 ProSitePatterns Serine/Threonine protein kinases active-site signature. 729 741 IPR008271 GO:0004672|GO:0006468
Seca4g09137 988 Coils Coil 566 586 - -
Seca4g09137 988 SUPERFAMILY PYP-like sensor domain (PAS domain) 169 260 IPR035965 -
Seca4g09137 988 MobiDBLite consensus disorder prediction 109 143 - -
Seca4g09137 988 ProSitePatterns Protein kinases ATP-binding region signature. 641 664 IPR017441 GO:0005524
Seca4g09137 988 SUPERFAMILY PYP-like sensor domain (PAS domain) 450 549 IPR035965 -
Seca4g09137 988 MobiDBLite consensus disorder prediction 317 421 - -
Seca4g09137 988 FunFam Putative LOV domain-containing protein 162 320 - -
Seca4g09137 988 CDD PAS 175 259 IPR000014 -
Seca4g09137 988 FunFam Serine/threonine-protein kinase OXI1 692 760 - -
Seca4g09137 988 Pfam Protein kinase domain 676 808 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g09137 988 Pfam Protein kinase domain 852 943 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g09137 988 Gene3D Transferase(Phosphotransferase) domain 1 852 957 - -
Seca4g09137 988 CDD PAS 449 549 IPR000014 -
Seca4g09137 988 PANTHER FLIPPASE KINASE 1-RELATED 144 677 - -
Seca4g09137 988 SMART serkin_6 635 943 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g09137 988 MobiDBLite consensus disorder prediction 341 379 - -
Seca4g09137 988 Gene3D Phosphorylase Kinase; domain 1 676 687 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09137 Seca-Chr4 216865809 216884022 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09137 2 988 AGC Kinase Gene Family AT3G45780 62.004 0.0 1201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Seca4g09137 Pkinase 3.7e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09137 K20715 - gmx:100817565 1391.71