Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09126 ATGTATGCACACTCCAACACCGCATTCTCACGCGCCACCACTGAATCATCCCTTTCCTTACCTTCCCCACTAATGCACCATCCTTTCCCCGACCTCACCGAGTTGGAGACTCTCTCCCAACTCAATAACTCGGAGGTAAGTTACAACAACAGCAACAGTTGTAGCAGTGGTTATAGCAGCTACGGTGGATCACCTACTTCCATGGCAAGTCCCACCTTGATGCAGAGGAGCGTTAGTAGCCATTCCCTCCACATGAATAATAATAATAATAATGGGACCTACCACCCTCTTTCTGCTTTCTTTGCTGAGTTGCTCGACTCCGACGACGCTCCGGTCAGGAGAGTTTACAGTACTGGCGACCTGCAGAGGATTAATGGAATGCAACATAATCATCACTCGGATAGTCCACTGTCAAGCGAAAGTTGTATGATCATAGAAGGGATGAGCCGAGCCTGTCGATATAGCCCAGAAGAGAAGAAAGTGAGAATTGAGAGATATAGAAACAAGAGGAACCAGAGGAACTTCAACAAGAAAATTAAGTATGCTTGTAGGAAGACATTAGCAGACAGCAGGCCACGCATCAGAGGAAGGTTTGCAAGGAATGATGAAATTGATAAGAAACCTACAGTTCAGTGGAGCCACATTGGTGCTGGTGAGGAAGAGGATGAGGAAGATGAGAATTGGATCAGTATCTTTGATTCCATAGTTGCTGCAAATCTTGCTCAAGAGTCTCAAGGCTGTTCCTCCTTTGATCTAATTTATTAG 765 0.4562 MYAHSNTAFSRATTESSLSLPSPLMHHPFPDLTELETLSQLNNSEVSYNNSNSCSSGYSSYGGSPTSMASPTLMQRSVSSHSLHMNNNNNNGTYHPLSAFFAELLDSDDAPVRRVYSTGDLQRINGMQHNHHSDSPLSSESCMIIEGMSRACRYSPEEKKVRIERYRNKRNQRNFNKKIKYACRKTLADSRPRIRGRFARNDEIDKKPTVQWSHIGAGEEEDEEDENWISIFDSIVAANLAQESQGCSSFDLIY. 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09126 254 MobiDBLite consensus disorder prediction 1 21 - -
Seca4g09126 254 MobiDBLite consensus disorder prediction 1 23 - -
Seca4g09126 254 Pfam CCT motif 161 201 IPR010402 GO:0005515
Seca4g09126 254 MobiDBLite consensus disorder prediction 49 71 - -
Seca4g09126 254 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 40 220 IPR045281 GO:0009909
Seca4g09126 254 ProSiteProfiles CCT domain profile. 159 201 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09126 Seca-Chr4 216621755 216624478 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09126 155 207 C2C2-CO-like Transcription Factor Family AT5G15850 47.170 3.26e-12 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca4g09126 CCT 1.3e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09126 - - gmx:102661609 320.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03971 4 70181885 70184466 Seca4g09126 4 216621755 216624478 PCT