Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09115 ATGAACATCTCCGATAATGATTCATTAAGAGATGAAAAGATTGAAACCGCTCGCTACCTCATAACCAAATGGGATCCTATTCCCATTTCCAACCAACCTCAATCTCCCTTCAACGCCACAACCACCGCTCCTCTTTTCAGCAACACCCGCCACGAAGCCAAACAGTACCTAGATTCCATCAAGAGCCTACAATCCTCTATGCAGAACCTCATCGCACGGGATTCCTCCTCCGAGGAACTCGTCCAGGCCCATTTCTTGATGCAACTCGCCATGAAGAGGCTCGAGACGGAATTCTATCGGATATTAGCCAAAAACAAGGCTCAATTGGACCCTGAATCCTTCTCCGTCCTTTTCTCCTCTGAACGCCGGAGCAGCGTCTCCGATTACGATGAAGAATCCTTCGACGATGAGTTCTCCGAGTCTGTCATGGCGGATTTGAAAGCCATTGCGGACTGTATGGTTTCCGCCGGCTATAGCAAAGAGTGCATCAGAATTTATACGCTCGTGAGAAAGTCGATTGTAGATGAGTCACTAAGCAATCTCGGAGTGGAGAGGCTCAGCGTTTCTCAGGTTCAGAAGATGGAATGGGAGGTGCTTGAGCCGAAGATAAAGTGCTGGCTGAGCTCCATCAAGGTCGCCGTAGGTACTCTGTTTCACGGCGAGAAAACTCTCTGCGAAACCGTCTTCGGTGAATCGAAGAAGAAGATCGCGGAGTCCTGTTTCGTTGAGGTTTGCAGAGAGGCCGCTTCGTGCCTGTTTGGATTCCCGCGAATTGTGGCAAAGTGCAAGAAAACTCCTGAGAAAATGTTCAGGACGCTGGACATGTACGAAGCAATCTCTCATAACTGGAAACGAATTGAATCCACGTTCTCGTTCGAATCAACCTCTGCGATTAAATCACAGGCCATCGCTTCAAAGGCGAAGCTCGCCAAGGCCGTTAGGAAGATGTTATCGAACTTCGAATCGGCGATTCAGAAGGAATCCTCGAAGATTCCGGTGCCAGGTGGAGGAGTCCACCCGCTCACGCGCTACGTCATGAACTACATCGCGTTGCTAGCCGAGTACAGACGCGCGCTCGCTGAAATAGTCGCCGATTGGCCGCAGAATCCGTTGCCGGAGTCTTACTACCGTAATCCGGATCGCGTGGAAAAGAATCCACCGTCGGAGATTGCGGAACGTGTCGCGTGGCTGATTCTTATGCTTCTCTGCAAGATCGACGGGAAATCAGAGCTCTACAAGGACGTTGCACTCTCTTACCTGTTCCTCGCGAACAACATGCAATACGTCGTAGTAAAGGTCCGCAAATCGAAACTAAGGCTTCTTCTCGGTGAGGATTGGTTGAAGAAGCAAGAGTCGAAGGTAAAAGACTACATCTCCAAGTACGAGCGTATGGGATGGAGCAAGGTGCTTTCGTCGCTGCCGGAAAATCCGACGGCGGAGATACCAGCGGAGCAGGCAACGGCTATGTTCCAGAGTTTCGAGGCCGCATTCCATGAAGCTTGCAGGGTACAGTACTCGTGGGTTGTATCCGACCCGAAACTGCGAGACGAAATCGAAGCTTCAATAGCTTTGAAGGTGGTGCCCAGGTACCTGGAATTCTATAATAAGTATTGGGTCGGGTCGGAGTCCGAGGCAAGCTTGTCACCCGATGATTTGGCGGATTATCTTTCTGACATTTTGTATGGGCTTGAGGGACACTCGGGTAGCGTTTCGTCGCAATCTCCTTCTATTCGTTTTCGCTTCAAACGCCGGTAA 1755 0.5043 MNISDNDSLRDEKIETARYLITKWDPIPISNQPQSPFNATTTAPLFSNTRHEAKQYLDSIKSLQSSMQNLIARDSSSEELVQAHFLMQLAMKRLETEFYRILAKNKAQLDPESFSVLFSSERRSSVSDYDEESFDDEFSESVMADLKAIADCMVSAGYSKECIRIYTLVRKSIVDESLSNLGVERLSVSQVQKMEWEVLEPKIKCWLSSIKVAVGTLFHGEKTLCETVFGESKKKIAESCFVEVCREAASCLFGFPRIVAKCKKTPEKMFRTLDMYEAISHNWKRIESTFSFESTSAIKSQAIASKAKLAKAVRKMLSNFESAIQKESSKIPVPGGGVHPLTRYVMNYIALLAEYRRALAEIVADWPQNPLPESYYRNPDRVEKNPPSEIAERVAWLILMLLCKIDGKSELYKDVALSYLFLANNMQYVVVKVRKSKLRLLLGEDWLKKQESKVKDYISKYERMGWSKVLSSLPENPTAEIPAEQATAMFQSFEAAFHEACRVQYSWVVSDPKLRDEIEASIALKVVPRYLEFYNKYWVGSESEASLSPDDLADYLSDILYGLEGHSGSVSSQSPSIRFRFKRR. 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09115 584 SUPERFAMILY Cullin repeat-like 40 558 IPR016159 -
Seca4g09115 584 Pfam Exo70 exocyst complex subunit 205 558 IPR046364 GO:0000145|GO:0005546|GO:0006887
Seca4g09115 584 Gene3D Exocyst complex component Exo70 38 566 - -
Seca4g09115 584 PANTHER EXOCYST COMPLEX PROTEIN EXO70 5 556 IPR004140 GO:0000145|GO:0006887
Seca4g09115 584 Coils Coil 53 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09115 Seca-Chr4 216244742 216246496 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09115 20 562 EXO70 exocyst subunit family AT5G59730 47.917 1.70e-174 507
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09115 K07195 - gmx:100801773 704.516