Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09107 ATGGCTCCACCTAAAGCAGATAGTTCAAAGAAGGCTGATCCTAAGGCTCAAGCCTTGAAAACTGCCAAAGCAGTCAAGTCAGGCCCTACCTTTAAGAAGAAGGCCAAAAAGATCCGGACATCTGTTACTTTCCATCGACCAAAGACTTTGAAAAAGGATAGAGACCCCAAATACCCTTGTATTAGTGCTACACCAAGGAATAAGCTAGATCACTATCAGATTCTGAAATATCCTCTCACAACTGAGTCTGCAATGAAGAAGATTGAAGACAACAACACTTTGGTTTTCATTGTTGACTTACGAGCTGACAAGAAGAAGATCAAGGATGCAGTAAAGAAAATGTATGACATCCAGGCCAAGAAAGTAAACACCTTGGTCAGACCTGATGGCACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGCCTTGGATGTAGCAAACAAGATTGGGATTATCTAA 465 0.4194 MAPPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRDPKYPCISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLVRPDGTKKAYVRLTPDYDALDVANKIGII. 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09107 154 Hamap 50S ribosomal protein L23 [rplW]. 74 154 IPR013025 GO:0003735|GO:0005840|GO:0006412
Seca4g09107 154 PANTHER 60S RIBOSOMAL PROTEIN L23A 7 154 IPR013025 GO:0003735|GO:0005840|GO:0006412
Seca4g09107 154 MobiDBLite consensus disorder prediction 1 38 - -
Seca4g09107 154 Pfam Ribosomal protein L23, N-terminal domain 15 63 IPR005633 -
Seca4g09107 154 Gene3D - 35 154 IPR012677 -
Seca4g09107 154 Pfam Ribosomal protein L23 74 136 IPR013025 GO:0003735|GO:0005840|GO:0006412
Seca4g09107 154 ProSitePatterns Ribosomal protein L23 signature. 132 147 IPR001014 GO:0019843
Seca4g09107 154 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 71 147 IPR012678 GO:0003735|GO:0005840|GO:0006412
Seca4g09107 154 FunFam 60S ribosomal protein L23a 32 154 - -
Seca4g09107 154 NCBIfam 50S ribosomal protein L23 78 154 IPR019985 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09107 Seca-Chr4 216095713 216097905 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09107 1 154 Cytoplasmic Ribosomal Protein Gene Family AT2G39460 87.662 1.49e-69 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09107 K02893 - jre:109021970 275.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03937 4 69497173 69498821 Seca4g09107 4 216095713 216097905 PCT