Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09102 ATGCCGATTTCCAGAATTGCCATCGGAAGTCCTTCAGAGTTCAGCCAAGCAGATGCCCTTAAGGCTGCCCTCGCTGAGTTCATCTCAATGCTCATCTTTGTCTTTGCTGGGGAAGGCTCTGGCATGGCTTTTAATAAGCTCACAAATAATGGTTCAGCAACACCAGCTGGGCTAGTAGCAGCATCACTATCACACGCCTTTGCTCTTTTTGTGGCGGTTTCTGTTGGTGCTAACATTTCTGGTGGTCATGTTAACCCTGCTGTCACTTTCGGTGCCTTTATTGGTGGTCACATCACTCTCCTTAGAAGCATTTTGTATTGGATTGCTCAGTTGCTCGGCTCTGTCGTTGCTTGCTTGCTCCTTAAATTTGCCACTGGTGGATTGGAAACATCTGCATTTGCACTGTCTTCTGGAGTAGGAGCAGGGAATGCGCTGGTGTTTGAGATTGTGATGACTTTTGGTTTGGTTTACACGGTGTATGCAACTGCAGTGGATCCAAAGAAGGGTGACCTTGGGATAATTGCTCCAATTGCAATTGGTTTCATTGTGGGTGCTAACATCTTGGCTGGTGGTGCATTTGATGGTGCATCAATGAACCCTGCAGTGTCTTTTGGGCCTGCTGTTGTTAGCTGGACATGGGATAACCACTGGGTCTACTGGGCCGGCCCATTCATTGGTTCTGCCATTGCTGCTCTTGTCTATCAGATTTTCTTCATTGCCAGAAACACTCATGAACAGCTCCCCACCACAGATTATTAG 759 0.4743 MPISRIAIGSPSEFSQADALKAALAEFISMLIFVFAGEGSGMAFNKLTNNGSATPAGLVAASLSHAFALFVAVSVGANISGGHVNPAVTFGAFIGGHITLLRSILYWIAQLLGSVVACLLLKFATGGLETSAFALSSGVGAGNALVFEIVMTFGLVYTVYATAVDPKKGDLGIIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWDNHWVYWAGPFIGSAIAALVYQIFFIARNTHEQLPTTDY. 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09102 252 PANTHER AQUAPORIN-8 6 247 IPR034294 -
Seca4g09102 252 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Seca4g09102 252 Pfam Major intrinsic protein 14 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca4g09102 252 Gene3D Glycerol uptake facilitator protein. 4 252 IPR023271 -
Seca4g09102 252 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca4g09102 252 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca4g09102 252 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca4g09102 252 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca4g09102 252 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca4g09102 252 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca4g09102 252 CDD MIP 21 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca4g09102 252 FunFam Probable aquaporin TIP1-1 4 252 - -
Seca4g09102 252 SUPERFAMILY Aquaporin-like 17 244 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09102 Seca-Chr4 216043049 216044885 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09102 1 252 Major Intrinsic Protein MIP AT4G01470 80.159 5.67e-145 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09102 K09873 - gmx:547794 465.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03933 4 69407354 69408799 Seca4g09102 4 216043049 216044885 PCT