Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09101 ATGACACCCCAAGAAGAACGCCTTGTGCTGGAGCTTCAATCAAAATGGGGAAATAGATGGTCAAGGATTGCTCGCAAGTTACCTGGTCGCACAGATAATGAGATTAAGAATTATTGGAGAACTCACATGAGGAAGAAGGCTCAGAGCAAAAAGCAGGGAGGGTCTTCTAGTGGTCATTTCTCAGTATCCTCAAACAATCATGCAGTGGATTCACATGCTTCCAAAAAGGCTGGAGAAGAGAGTTTCTATGACACAGGAGGTCCTAACAAGGTAGCCTCAACCCACCAAGTTAAGGTGGGAAAAGGAGAAGATCATGAAGTTGAACAAGAGTTCTCTATGGATGATATATGGAAAGATATTGATCTGTCCTCAGAGGAGAACATTGATCTGCAGGCAGTGTATGATGGACACAGTGAAGAGGGTTGCAACTTTTCTTGTCCACAGATGCCATCCCCATCCAGCTGGGAGTATTCTTCAGACCCTCTATGGGTGATGGATGAAGAAAGTGTGCTATTCCCTATGAGTGACCCATATTTTTCCTGCGATGCACAAGGCAGCAGTGCATTTCTAACCGGCTAA 579 0.4491 MTPQEERLVLELQSKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKKAQSKKQGGSSSGHFSVSSNNHAVDSHASKKAGEESFYDTGGPNKVASTHQVKVGKGEDHEVEQEFSMDDIWKDIDLSSEENIDLQAVYDGHSEEGCNFSCPQMPSPSSWEYSSDPLWVMDEESVLFPMSDPYFSCDAQGSSAFLTG. 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09101 192 SUPERFAMILY Homeodomain-like 2 48 IPR009057 -
Seca4g09101 192 Gene3D - 2 77 - -
Seca4g09101 192 ProSiteProfiles Myb-like domain profile. 1 43 IPR001005 -
Seca4g09101 192 MobiDBLite consensus disorder prediction 43 107 - -
Seca4g09101 192 Pfam Myb-like DNA-binding domain 2 42 IPR001005 -
Seca4g09101 192 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 103 IPR044676 GO:0003700|GO:0006355|GO:0043565
Seca4g09101 192 SMART sant 1 45 IPR001005 -
Seca4g09101 192 CDD SANT 1 43 IPR001005 -
Seca4g09101 192 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 47 IPR017930 -
Seca4g09101 192 MobiDBLite consensus disorder prediction 50 71 - -
Seca4g09101 192 FunFam MYB transcription factor 1 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09101 Seca-Chr4 216038238 216040035 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09101 1 168 MYB Transcription Factor Family AT3G46130 51.412 3.28e-45 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca4g09101 Myb_DNA-binding 9.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09101 K09422 - gmx:100775900 267.314
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g09101 4 216038238 216040035 Seca4g03930 4 69370137 69371643 PCT