Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09095 ATGAAAACTGCATTTGGCATATTGAAGTTTCTCCTTGAGCTGTTAAGTCGGCCAACTGCAGTGAACGTATCAGATGCTGCAGCAAAACTCAATGAAGTCATATCTAAGGCTTCTGCTACAACTTCAGAGGCCGGGAGTGTTTTTCAGGCTTATGTGGAGGCTGCTGAAATTATGCTAGAGGATGATGTTGCCTCGAATAGAGCAATTGGTTCTTATGGAGCTAGTTTTATTCGACATCAAACAGAGAAACATAAGCTCTGTTTTAACCCATTGCAACACTGGAAGGTCACGTGGATACGTTTGAGCAGAGGAAAACGAGTTGTGCCAGGGTGGGTGCAGGGCAAAGAGTTGGCATACGAATTTGGAAGTGACATTAACATAAGTGGTAAATTCCTTGACTCTGAGATTATTTTTCTTCATAAGATGGACGATAATTCAGAAGAAGCAGTATGGAAAGAAATAGAGAATGTAACATTAGAGGGATTGCAGGAGATGAGTGTGTGGTCAGATGAACGTGAAGATGAAGAAGAAGAAGAGCGGGACAGTAAAGGTTCAAAAGAAGAAGATGATGACTATGAAGAAGATGATGACTATGATGAAGATGAAGATGAAGACTATGTTGATGATGAAGGGGAAGATTGGGACCATTCACCAGTGTATCATGATGATGACCATAATGAAGAGGACGAGGATGATGAAGACAGAGATGAAGAGAGTGGTGAAGATGATGCATTTGAATCTGAGGTTGCAGTTGAAGGTATCGGTATAAATGATGTGGATGATATCCGTAAGATAGATTTGGTAAATATTAGTTGGGAGGAGGTGTGCAGGTGTGTATTTTCTGACTTGGATGTTGCATATGAATTCTACTGTAAATATGCAAGGAGAAAGGGTTTTGTTGTCCGAAAAGGAAAGGTGGTAAAGAATAGTAAAGGGGAAATTGTACAACAAACACTTTTTTGCAACAGGCAAGGGAAAAGAATAAGCTCAGACTTATTGAGTGGGGGATGGTATGTGAAAATCTTCAATGATGATCACAATCATAGCATGCTTGTGAACAAGTATTGTGGGATGATGGCAACTCACCGGAAAATGACCGAGTCTGATATAATGGAAATGTACAGTTTGAGAAGTGTTGGCATATCCGTACCTGATATATATGCCTCTTTTGCTAGTCGGTCTGGAGGCTATGACAAGGTTGGGTTCCGCAAAAAGGATGTGTACAATCAGATTGACAAACAACGGCGGTTTCAAAGGTCTGATGCAAAAACTGTGCTAAGGTACCTACGTGAAATGCGAAAGCATGACCCACTAATGTCTTTCACACACAGTGTTGATGAAGAAAGTAGGCTACAACATCTTTTTTGGTCTGATGGTATTAGTAAGTTAAATTATGAACCTTTTGGTGATGTGCTAGCGTTCGATGCGACTTACGGGAGGAATAAATATAAGTGTCCCCTAGTTATATTTTCCGGGGTCAACCATCACAACCGTACTACTGTCTTTGGCAGTGCTATTGTAGCTAATGAGACAGAAGACACATATGTTTGGCTACTCCAACAATTTAAAGATGCAATGAAAGGGAAGTCACCGAAGGCAGTTATCACAGATGGTGATATGGCTATGAGGAATGCCATAAAAAGAGTCTTTCCAAGGGCACATCACAGACTATGTGCATGGCATTTGCTTCGGAATGCAACTTCAAATGTTGGAATCCCTGCATTTCTTGAAGAGCTAGAAAGGTGTATGTTTGCTCATGTTGAAGTTGATGAATTTTCCCGGCGGTGGAGAGACATGGTTTGTAAGTATAATTTAGAGGATAACAATTGGGTTAAAGATTTGTATGAGAAGAAGCATATGTGGGCCACATCATATATAACAGGTCAATTTTTTGCGGGGTTGCGGACAACTTCTCGGTGTGAGAGTTTGCATGGTCAACTTGGAAGGTTTGTAAAATCGCGGTATAGCCTAACTGAATTTGTTCAACACTTCCAGCGGTCGCTTTGTTACATGAGGTATAAAGAAGAGAAGGATGATTTTGCATGTATGTTGGGTGATGCTGTGTTAACAACAAACTTGCAGCCGTTGGAACGGTCGGCATCAAGGCACTTCACAAGAAAGATCTTCCTATTGTTTCGTAGAGTGTTATTCCGGGCTAGCCAGAACTTTGTTGTCCATTGTAGGCAGTCAGCCATGTGGATGATTTACACAGTTAAGAGGTACCAAAGTGGTGGAAAAGAATGGTATGTGTCACTCTATCCACCTTCAAATGATTTCAAATGTTCGTGCCAGCGAATGGAATCATATGGGTTGCCATGCCCACACATCATAGCTGTGTTGGTTTACCTTGACTATTCAGAGATTCCTCCATGTCTAATACTTGAAAGGTGGACGAAACGTGCTAAAGAATCTATCCGTCACATACTGATTGCAAACACGCACTATTGGGACTCATCCTTGATTGCTCGATATGCTTCCCTGCTAGAGCAATGCAGACAAATGTGTAACCTGGCTGCACAGTGTGATGAAGATTTTAACCGTATTAAAGAGTGGATAAATTCTGAAATCCAAAGGTTGAAAGATAAATATGGGGATACTATTTTTGCCCAAGAGGCAGATTTGGATGGGCTGGACAGTGGTGTGCTTGATCCTGTTCGCGTTAGAACAAAAGGTTGCCCTAGAGCCTCAACCAGTGTTCCTAGTAAAGGTAGGATAAAGAACAAGTGTAGCAGGTGTGGCGGATTGGGTCATAATAAAAAATGTTGTCCTCAAACACGCATGGTACAACCTGCTGGCACCCCTTGTGGGATGGGTGGTCAAGAAGTGGCAAGTCAAAGTACATTTGATCTATATGTGGACTTGCATTGTGGCTCTCCATTGATTGGACAAACTCAGCTCAACTTTGAGGCCGAGGAAGGATGCAGTAATGGGCGTGGAACTTGA 2943 0.4179 MKTAFGILKFLLELLSRPTAVNVSDAAAKLNEVISKASATTSEAGSVFQAYVEAAEIMLEDDVASNRAIGSYGASFIRHQTEKHKLCFNPLQHWKVTWIRLSRGKRVVPGWVQGKELAYEFGSDINISGKFLDSEIIFLHKMDDNSEEAVWKEIENVTLEGLQEMSVWSDEREDEEEEERDSKGSKEEDDDYEEDDDYDEDEDEDYVDDEGEDWDHSPVYHDDDHNEEDEDDEDRDEESGEDDAFESEVAVEGIGINDVDDIRKIDLVNISWEEVCRCVFSDLDVAYEFYCKYARRKGFVVRKGKVVKNSKGEIVQQTLFCNRQGKRISSDLLSGGWYVKIFNDDHNHSMLVNKYCGMMATHRKMTESDIMEMYSLRSVGISVPDIYASFASRSGGYDKVGFRKKDVYNQIDKQRRFQRSDAKTVLRYLREMRKHDPLMSFTHSVDEESRLQHLFWSDGISKLNYEPFGDVLAFDATYGRNKYKCPLVIFSGVNHHNRTTVFGSAIVANETEDTYVWLLQQFKDAMKGKSPKAVITDGDMAMRNAIKRVFPRAHHRLCAWHLLRNATSNVGIPAFLEELERCMFAHVEVDEFSRRWRDMVCKYNLEDNNWVKDLYEKKHMWATSYITGQFFAGLRTTSRCESLHGQLGRFVKSRYSLTEFVQHFQRSLCYMRYKEEKDDFACMLGDAVLTTNLQPLERSASRHFTRKIFLLFRRVLFRASQNFVVHCRQSAMWMIYTVKRYQSGGKEWYVSLYPPSNDFKCSCQRMESYGLPCPHIIAVLVYLDYSEIPPCLILERWTKRAKESIRHILIANTHYWDSSLIARYASLLEQCRQMCNLAAQCDEDFNRIKEWINSEIQRLKDKYGDTIFAQEADLDGLDSGVLDPVRVRTKGCPRASTSVPSKGRIKNKCSRCGGLGHNKKCCPQTRMVQPAGTPCGMGGQEVASQSTFDLYVDLHCGSPLIGQTQLNFEAEEGCSNGRGT. 981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09095 980 ProSiteProfiles Zinc finger SWIM-type profile. 736 784 IPR007527 GO:0008270
Seca4g09095 980 MobiDBLite consensus disorder prediction 169 212 - -
Seca4g09095 980 Pfam MULE transposase domain 471 565 IPR018289 -
Seca4g09095 980 PANTHER OS01G0519700 PROTEIN 276 918 - -
Seca4g09095 980 ProSiteProfiles Zinc finger CCHC-type profile. 908 924 IPR001878 GO:0003676|GO:0008270
Seca4g09095 980 Pfam SWIM zinc finger 760 782 IPR007527 GO:0008270
Seca4g09095 980 MobiDBLite consensus disorder prediction 162 248 - -
Seca4g09095 980 MobiDBLite consensus disorder prediction 224 248 - -
Seca4g09095 980 SUPERFAMILY NagB/RpiA/CoA transferase-like 16 79 IPR037171 -
Seca4g09095 980 SMART 26again6 759 786 IPR006564 GO:0008270
Seca4g09095 980 Gene3D - 7 85 IPR027363 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09095 Seca-Chr4 215919179 215927379 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09095 16 82 Eukaryotic Initiation Factors Gene Family AT2G05830 62.687 2.95e-19 88.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca4g09095 MULE 4.5e-30 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09095 - - tpra:123913749 684.485