Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09094 ATGAAGAGAGGCAGAGAAGAGGAGGGTGAGTTAGACGACATGGCTAATTGTTTAATGCTACTGACCAAAGTTGGCGAAAATAGTAGTGAAACCAATTCTCCATCGAGAGAAAGAGAGTTGAAGGACGGTGTTTTTAAGTGCAAGACATGTAATAGACAGTTTTCTTCTTTTCAAGCCCTTGGAGGACACAGAGCCAGTCACAAAAAGCCCAAGCTCATGGTTTCAGACCTTTCGTGTCATCATCATCACTTACCAACGGGCTCAACCATGAAGCCCAGGATGCACCCATGCCCGATTTGTGGGCTTGAGTTCGCGATTGGACAAGCGCTGGGAGGGCACATGAGAAAACATAGAGGTGATATTAACGATGGTACTTTGCTGATTCGCAATAAGCATAACACCACCACCTTCCCCGTGTTGAAGAAATCGAAAGATGCTCATGAAAGGTTGAATTTGTGCTTGGACTTGAACTTGACGCCATCGGAGAATGTTGATCTTAAGCTCAACCTTACCACGCCTGTTCTCAATTGTTTCATTTGA 540 0.4481 MKRGREEEGELDDMANCLMLLTKVGENSSETNSPSRERELKDGVFKCKTCNRQFSSFQALGGHRASHKKPKLMVSDLSCHHHHLPTGSTMKPRMHPCPICGLEFAIGQALGGHMRKHRGDINDGTLLIRNKHNTTTFPVLKKSKDAHERLNLCLDLNLTPSENVDLKLNLTTPVLNCFI. 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09094 179 ProSitePatterns Zinc finger C2H2 type domain signature. 47 67 IPR013087 -
Seca4g09094 179 PANTHER ZINC FINGER PROTEIN ZAT5 6 165 - -
Seca4g09094 179 ProSiteProfiles Zinc finger C2H2 type domain profile. 95 122 IPR013087 -
Seca4g09094 179 Pfam C2H2-type zinc finger 95 118 - -
Seca4g09094 179 Pfam C2H2-type zinc finger 44 70 - -
Seca4g09094 179 SUPERFAMILY beta-beta-alpha zinc fingers 44 117 IPR036236 -
Seca4g09094 179 ProSiteProfiles Zinc finger C2H2 type domain profile. 45 72 IPR013087 -
Seca4g09094 179 ProSitePatterns Zinc finger C2H2 type domain signature. 97 117 IPR013087 -
Seca4g09094 179 Gene3D Classic Zinc Finger 21 123 - -
Seca4g09094 179 SMART c2h2final6 45 67 IPR013087 -
Seca4g09094 179 SMART c2h2final6 95 117 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09094 Seca-Chr4 215913685 215914224 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09094 1 170 C2H2 Transcription Factor Family AT2G28710 46.199 2.12e-41 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca4g09094 zf-C2H2_6 3.1e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09094 - - gmx:100781211 241.891