Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09090 ATGTCTCAAAGAATCGGAACAAAGCTGTTCATCAGCAGACTATCATTTTACACTACAGAGGAGCACCTAAAGACATTGTTCTCTCCGTTTGGAGTAGTTAAAGAAGCTAAACTTGTGGTGGACCCAAGAACCGAAAGGCCCAAAGGGTTTGGCTTTGTTTCCTATGAGTCTGAAATTGAAGCAGAAAAAGCTGTGAAAGCCATGAATGGCAGGATAGTTGATGGAAGGCTGATTTTCGTTGAACCTGCAAAGGAAAAATGA 261 0.4176 MSQRIGTKLFISRLSFYTTEEHLKTLFSPFGVVKEAKLVVDPRTERPKGFGFVSYESEIEAEKAVKAMNGRIVDGRLIFVEPAKEK. 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09090 86 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 8 84 - -
Seca4g09090 86 SMART rrm1_1 8 81 IPR000504 GO:0003723
Seca4g09090 86 Gene3D - 2 86 IPR012677 -
Seca4g09090 86 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 2 86 - -
Seca4g09090 86 SUPERFAMILY RNA-binding domain, RBD 6 86 IPR035979 GO:0003676
Seca4g09090 86 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Seca4g09090 86 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09090 Seca-Chr4 215885726 215892695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09090 6 86 Eukaryotic Initiation Factors Gene Family AT2G23350 34.568 1.22e-11 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09090 - K13195 ccaj:109806644 139.813
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g09090 4 215885726 215892695 Seca4g09090 4 215885726 215892695 ECH