Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09082 ATGGAGGAGAATCACACTGCAGAGGCAGGGAGTGGAATGAGAGGGTCAAGTGGGAGTACTCCCTCAGCAGGTTCACGATGGAACCCGACAAAAGAGCAAATAAGTATGTTAGAGAACCTGTTTAAGCAGGGAATTAGGAATCCAAATGCTGAGCAAATACAACATATTACCTCTAGTCTCAGGGCGTATGGTCATATCGAAGGGAAAAATGTCTTCTATTGGTTTCAGAATCACAAAGCCAGGCAAAGGCAGAAGCAGAAACAGATCAAGCAACAAAGAATTCCACATTTCAATCGCTATAATATTCATGCCTGCACCTCGCAACCTATTTTCTCTCCTCCTCTGTGCCAAAATGACATCTGTGTCCCACATTGCTTGCAAGTGCAACAGAATGGGATGAGGTTTTTATATCCTCAACAACAAAAGGTGCTTGCCGCTAAGCAAGTTGTGTCCTTTGGGATGCCGAGAATCTGTGATGGCCCGCAGATATGTTCACAATTCCAACAGAATTATAACAACTTTGGCAACAGTAACCAATGGCAATTAGAGACGTTGGCTCTCTTTCCTCTTCACCCTACTGGTATTTTGGAAGGAAAAGCAACACACCAAGCGCCTTCAATTTCAGTTGACACATCTTCTACTTCTCATGATATTGATGTTGAAGATCATTGTCCTCCAAATAAAACGCAACCTCTTTCATTATTTTTACCTCTTGCTACGAGGGTTTCGAGGGAGTGA 738 0.4309 MEENHTAEAGSGMRGSSGSTPSAGSRWNPTKEQISMLENLFKQGIRNPNAEQIQHITSSLRAYGHIEGKNVFYWFQNHKARQRQKQKQIKQQRIPHFNRYNIHACTSQPIFSPPLCQNDICVPHCLQVQQNGMRFLYPQQQKVLAAKQVVSFGMPRICDGPQICSQFQQNYNNFGNSNQWQLETLALFPLHPTGILEGKATHQAPSISVDTSSTSHDIDVEDHCPPNKTQPLSLFLPLATRVSRE. 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09082 245 SUPERFAMILY Homeodomain-like 19 88 IPR009057 -
Seca4g09082 245 FunFam WUSCHEL-related homeobox 4 24 91 - -
Seca4g09082 245 Pfam Homeodomain 25 84 IPR001356 GO:0003677
Seca4g09082 245 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 4 213 IPR044555 GO:0003700|GO:0099402
Seca4g09082 245 MobiDBLite consensus disorder prediction 10 28 - -
Seca4g09082 245 CDD homeodomain 26 80 IPR001356 GO:0003677
Seca4g09082 245 MobiDBLite consensus disorder prediction 1 28 - -
Seca4g09082 245 Gene3D - 24 91 - -
Seca4g09082 245 ProSiteProfiles 'Homeobox' domain profile. 20 85 IPR001356 GO:0003677
Seca4g09082 245 SMART HOX_1 22 89 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09082 Seca-Chr4 215779716 215780715 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09082 22 127 Wox Gene Family AT5G59340 63.551 5.31e-40 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Seca4g09082 Homeodomain 9.2e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09082 - - pvu:PHAVU_011G064900g 198.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g09082 4 215779716 215780715 Seca4g09082 4 215779716 215780715 ECH