Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09077 ATGGTTTTCTCTTCTATTCCAGCCTATTTAGATCCTCCCAATTGGCACCAACAGCAACCAAATCAACATCAAGCAAATGGCACGCATCAGTTGCTTCCACCGCTACCTGTTCCTCCACAGCCACATGCTCCTCACGGTGCAGGCTCAATCAGGCCCGGGCCGACACTGGATCAGGCCCAAGCCCAGGCTCAGCTAGCTAAGATAGCACCATCTGAAGCAGCTCTAAAGTGTCCTCGTTGTGAATCCACCAACACTAAATTCTGCTACTTCAACAATTACAGCCTCTCTCAACCGCGGCACTTCTGCAAGACGTGTAGGCGTTATTGGACAAGAGGCGGTGCTCTCAGGAATGTTCCTGTTGGTGGAGGATGCCGCAGAAACAAGAAGAGCAAAAGGAGTAGTAGTAGTAGTAACACTAGTACTCGCTCTGAATCTCCTCTATCTACTGATCATAACCACTCATCAGTACTTTCCAATTCCGTCACTAATAATGAGCTAATTCCAACAAATAATAACCGACCTTTCATGACCTCTCTTCAGAATCTGAGCCGTTATGGTGTGGGGAATATAGGCCTTAGTTTGCGTGAGATTCAAGCGCAGACTGGGCACGTGGGGTTTCAAACTGCAGAAGGAGGAACGATGGATGAGTGGCGGTTTCAACAGATTCCTTTCTTGAACGGTTTTGAGTCAAGTTCAACTGTTTCATACCCGTTTCAACCGTCTGGTTTGGTTGGAGAGATAGCAGAAGCTTCTAGGGTTACTCAACTACCATCTGTTAAATTGGAATACAATGGAGGAAGAGGAGGACTAAATTTATTGTCAAGATCTTCTCTGAACATAACGGAAAATAGTCATTACAATTCATGGACAACGGATTTATCTGCTCTGGCCTCTTCTTCCACTAGTCATCATCTCTTGTAA 921 0.4582 MVFSSIPAYLDPPNWHQQQPNQHQANGTHQLLPPLPVPPQPHAPHGAGSIRPGPTLDQAQAQAQLAKIAPSEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKSKRSSSSSNTSTRSESPLSTDHNHSSVLSNSVTNNELIPTNNNRPFMTSLQNLSRYGVGNIGLSLREIQAQTGHVGFQTAEGGTMDEWRFQQIPFLNGFESSSTVSYPFQPSGLVGEIAEASRVTQLPSVKLEYNGGRGGLNLLSRSSLNITENSHYNSWTTDLSALASSSTSHHLL. 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09077 306 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 51 207 IPR045174 GO:0003700|GO:0006355
Seca4g09077 306 MobiDBLite consensus disorder prediction 133 172 - -
Seca4g09077 306 Pfam Dof domain, zinc finger 74 129 IPR003851 GO:0003677|GO:0006355
Seca4g09077 306 ProSitePatterns Zinc finger Dof-type signature. 77 113 IPR003851 GO:0003677|GO:0006355
Seca4g09077 306 MobiDBLite consensus disorder prediction 11 55 - -
Seca4g09077 306 ProSiteProfiles Zinc finger Dof-type profile. 75 129 IPR003851 GO:0003677|GO:0006355
Seca4g09077 306 MobiDBLite consensus disorder prediction 11 29 - -
Seca4g09077 306 MobiDBLite consensus disorder prediction 119 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09077 Seca-Chr4 215718005 215719392 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09077 1 299 C2C2-Dof Transcription Factor Family AT2G37590 40.113 3.34e-51 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Seca4g09077 zf-Dof 1.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09077 - - ccaj:109798892 306.219